Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 MIR6730-201ENST00000622213 67 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AC073342.3-201ENST00000624211 193 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AL353743.4-201ENST00000422653 1547 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 AL355596.1-201ENST00000565399 3996 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA3P55318 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
FOXA3P55318 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC2.5□□□□□ -2.01
FOXA3P55318 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.5□□□□□ -2.01
FOXA3P55318 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 MTND5P7-201ENST00000413558 1798 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 CR383658.2-201ENST00000547576 1525 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 COX7B2-201ENST00000355591 542 ntAPPRIS P2 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 MIR372-201ENST00000362225 67 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 RNU6-1251P-201ENST00000364502 107 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC2.49□□□□□ -2.01
FOXA3P55318 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 SNORA46-201ENST00000384762 135 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 RN7SKP58-201ENST00000411010 305 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 RPL26P29-201ENST00000415623 438 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 CRYBB2P1-203ENST00000415709 538 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 GCG-202ENST00000418842 1289 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 RPA2P2-201ENST00000419698 796 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 CST9LP2-201ENST00000437612 320 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 RPS15AP29-201ENST00000445539 400 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 RPL29P29-201ENST00000448725 423 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC115115.1-201ENST00000449927 248 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 SSXP4-201ENST00000451349 245 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 FPGT-203ENST00000467578 601 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 AL161747.1-201ENST00000480068 358 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 NCOR1P1-202ENST00000486162 291 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 POU5F1P7-201ENST00000508759 541 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 RN7SKP244-201ENST00000516513 307 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AP001207.2-201ENST00000519490 539 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC008083.2-201ENST00000546707 476 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 AC006557.5-201ENST00000603126 811 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC016252.1-201ENST00000609721 474 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC2.49□□□□□ -2.01
FOXA3P55318 AL356321.1-201ENST00000621360 228 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 RPL23AP61-201ENST00000623642 466 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 CCT7-217ENST00000626868 249 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC2.49□□□□□ -2.01
FOXA3P55318 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 API5P2-201ENST00000397055 1498 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 AL353743.1-202ENST00000431724 1695 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC2.49□□□□□ -2.01
FOXA3P55318 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
FOXA3P55318 AC103988.1-201ENST00000566382 2177 ntBASIC2.49□□□□□ -2.01
FOXA3P55318 AC002546.1-201ENST00000588041 2504 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 EVI2A-202ENST00000461237 1540 ntAPPRIS ALT2 TSL 4 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC108206.1-201ENST00000570186 4159 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
FOXA3P55318 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 SNORD65-201ENST00000391079 73 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 RNA5SP317-201ENST00000410176 116 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RNU6-233P-201ENST00000410845 141 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RNA5SP311-201ENST00000411290 116 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC245054.2-201ENST00000415639 319 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
FOXA3P55318 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL590783.1-201ENST00000424138 456 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 OR8F1P-201ENST00000425243 930 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 RPL21P40-201ENST00000428586 483 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL117339.2-201ENST00000430475 180 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC2.48□□□□□ -2.01
FOXA3P55318 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 AC093392.2-201ENST00000450682 337 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 TPMTP4-201ENST00000450749 678 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 AC121764.2-201ENST00000469806 587 ntTSL 2 BASIC2.48□□□□□ -2.01
FOXA3P55318 RPL7P19-201ENST00000469948 618 ntBASIC2.48□□□□□ -2.01
FOXA3P55318 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms