Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC013470.4-201ENST00000619978 986 ntBASIC3.69□□□□□ -1.82
CDX1P47902 AC023510.2-201ENST00000622162 746 ntBASIC3.69□□□□□ -1.82
CDX1P47902 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC3.69□□□□□ -1.82
CDX1P47902 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC3.69□□□□□ -1.82
CDX1P47902 AC120349.2-201ENST00000625002 298 ntBASIC3.69□□□□□ -1.82
CDX1P47902 AL049536.1-201ENST00000625043 744 ntBASIC3.69□□□□□ -1.82
CDX1P47902 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.69□□□□□ -1.82
CDX1P47902 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.69□□□□□ -1.82
CDX1P47902 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
CDX1P47902 AC006971.1-201ENST00000407916 4486 ntBASIC3.69□□□□□ -1.82
CDX1P47902 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CDX1P47902 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CDX1P47902 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
CDX1P47902 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.68□□□□□ -1.82
CDX1P47902 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 OR4K15-201ENST00000305051 1216 ntBASIC3.68□□□□□ -1.82
CDX1P47902 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CDX1P47902 AC067945.1-201ENST00000342609 618 ntBASIC3.68□□□□□ -1.82
CDX1P47902 Y_RNA.408-201ENST00000383987 102 ntBASIC3.68□□□□□ -1.82
CDX1P47902 RNU6-761P-201ENST00000384148 107 ntBASIC3.68□□□□□ -1.82
CDX1P47902 RNU6-339P-201ENST00000384310 107 ntBASIC3.68□□□□□ -1.82
CDX1P47902 Z98745.1-201ENST00000402553 494 ntBASIC3.68□□□□□ -1.82
CDX1P47902 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 RPL26P29-201ENST00000415623 438 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AL645608.4-201ENST00000423619 154 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.68□□□□□ -1.82
CDX1P47902 ATP5F1P1-201ENST00000433775 569 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC084290.1-201ENST00000434995 374 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC092427.1-201ENST00000439177 601 ntBASIC3.68□□□□□ -1.82
CDX1P47902 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 H2AFZP6-201ENST00000444403 394 ntBASIC3.68□□□□□ -1.82
CDX1P47902 MTCYBP11-201ENST00000447254 1109 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC104651.2-201ENST00000447549 528 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AL162591.2-201ENST00000449634 317 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC108463.1-201ENST00000450258 347 ntBASIC3.68□□□□□ -1.82
CDX1P47902 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC3.68□□□□□ -1.82
CDX1P47902 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 LINC00377-201ENST00000456588 657 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 SYPL1P1-201ENST00000473622 768 ntBASIC3.68□□□□□ -1.82
CDX1P47902 IGLV2-34-201ENST00000490007 283 ntBASIC3.68□□□□□ -1.82
CDX1P47902 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 OR5H5P-201ENST00000503164 928 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC091868.1-201ENST00000508746 304 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.68□□□□□ -1.82
CDX1P47902 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.68□□□□□ -1.82
CDX1P47902 AC090695.1-201ENST00000561269 1222 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC3.68□□□□□ -1.82
CDX1P47902 AGGF1P5-201ENST00000567900 919 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC141257.3-201ENST00000572906 215 ntBASIC3.68□□□□□ -1.82
CDX1P47902 RN7SL652P-201ENST00000577769 300 ntBASIC3.68□□□□□ -1.82
CDX1P47902 MIR4644-201ENST00000579929 84 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC090616.5-202ENST00000582111 297 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC209154.1-201ENST00000582156 337 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 AL391001.1-201ENST00000602747 715 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC124312.4-201ENST00000605533 310 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AL451074.6-201ENST00000608512 729 ntBASIC3.68□□□□□ -1.82
CDX1P47902 MIR6748-201ENST00000610433 71 ntBASIC3.68□□□□□ -1.82
CDX1P47902 AC006386.1-201ENST00000619436 415 ntBASIC3.68□□□□□ -1.82
CDX1P47902 C2orf27A-204ENST00000623058 969 ntBASIC3.68□□□□□ -1.82
CDX1P47902 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC3.68□□□□□ -1.82
CDX1P47902 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
CDX1P47902 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 AC010300.1-201ENST00000600671 5134 ntBASIC3.68□□□□□ -1.82
CDX1P47902 GDI2P1-201ENST00000429312 1336 ntBASIC3.68□□□□□ -1.82
CDX1P47902 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
CDX1P47902 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.68□□□□□ -1.82
CDX1P47902 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.67□□□□□ -1.82
CDX1P47902 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CDX1P47902 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.67□□□□□ -1.82
CDX1P47902 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.67□□□□□ -1.82
CDX1P47902 PCF11-AS1-201ENST00000602322 1516 ntBASIC3.67□□□□□ -1.82
CDX1P47902 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.67□□□□□ -1.82
CDX1P47902 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
CDX1P47902 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CDX1P47902 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CDX1P47902 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
CDX1P47902 OR56B2P-201ENST00000317102 954 ntBASIC3.67□□□□□ -1.82
CDX1P47902 AL590240.1-201ENST00000334118 313 ntBASIC3.67□□□□□ -1.82
CDX1P47902 RNA5SP167-201ENST00000365461 116 ntBASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms