Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 AL356118.1-201ENST00000635272 1078 ntBASIC3.88□□□□□ -1.79
TNFRSF4P43489 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
TNFRSF4P43489 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
TNFRSF4P43489 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 RNU6-1151P-201ENST00000384684 107 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 RNU6-1176P-201ENST00000390955 107 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 ATP5F1P4-201ENST00000397288 746 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 UQCRFS1P3-201ENST00000407697 385 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 RN7SKP199-201ENST00000410325 305 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 RPS29P4-201ENST00000414733 161 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 RPL31P45-201ENST00000419532 356 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 PAICSP7-201ENST00000419829 962 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AL513175.1-201ENST00000431492 780 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 HMGN2P31-201ENST00000432430 273 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 HSPD1P21-201ENST00000436541 245 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC064874.1-202ENST00000440101 287 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC069285.2-201ENST00000440210 275 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 VN1R25P-201ENST00000443385 738 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AL050341.1-201ENST00000447743 313 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 SUN3-208ENST00000453192 801 ntTSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 VN1R40P-201ENST00000455196 941 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC018635.1-201ENST00000468292 1030 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 GYPA-204ENST00000504786 357 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 INPP4B-206ENST00000506217 673 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC110768.1-201ENST00000509222 400 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 RNU6-488P-201ENST00000515918 99 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 RNU6-416P-201ENST00000516265 103 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 SOD1P3-201ENST00000518682 454 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 HIGD1AP6-201ENST00000521833 279 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC007991.1-201ENST00000522680 631 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC087894.1-201ENST00000538359 518 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 GTF2IP22-201ENST00000554443 182 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC010735.1-201ENST00000567305 1026 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC122134.1-202ENST00000569111 1201 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 MTND6P33-201ENST00000571794 183 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 BNIP3P27-201ENST00000599991 412 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC133794.1-201ENST00000602731 914 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AP000255.1-201ENST00000610276 676 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 LINC00901.1-201ENST00000617252 152 ntBASIC3.87□□□□□ -1.79
TNFRSF4P43489 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 C2orf16-202ENST00000447166 16401 ntAPPRIS ALT2 TSL 3 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
TNFRSF4P43489 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC3.87□□□□□ -1.79
TNFRSF4P43489 AC011978.2-201ENST00000569835 2054 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 EIF1AY-202ENST00000382772 746 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
TNFRSF4P43489 MIR124-3-201ENST00000384866 87 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 MIR153-1-201ENST00000384914 90 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 MIR34B-201ENST00000385076 84 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 DSTNP4-201ENST00000399472 474 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 RN7SKP97-201ENST00000410966 333 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 AC069282.1-201ENST00000411911 526 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 UBE2V1P9-201ENST00000414760 368 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 KCTD9P3-201ENST00000434597 1169 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 YWHAZP8-201ENST00000436935 731 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.86□□□□□ -1.79
TNFRSF4P43489 AL592437.1-201ENST00000443781 492 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 SEPT14P24-201ENST00000447236 180 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 UBDP1-202ENST00000457888 382 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 AC087385.1-201ENST00000475062 312 ntBASIC3.86□□□□□ -1.79
TNFRSF4P43489 RPL21P103-201ENST00000479921 488 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 155.6 ms