Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 PABPC1P9-201ENST00000426076 1612 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL6A1P12109 KCNIP4-207ENST00000509207 1301 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.52□□□□□ -1.53
COL6A1P12109 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A1P12109 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 Y_RNA.11-201ENST00000362375 109 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 RNU6-374P-201ENST00000364146 108 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 Y_RNA.303-201ENST00000364998 94 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 ANP32E-202ENST00000369115 708 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 ESD-201ENST00000378697 1079 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 Y_RNA.390-201ENST00000383932 102 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 RNU6ATAC34P-201ENST00000408879 121 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 RNU2-42P-201ENST00000410697 113 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 AL353608.1-201ENST00000419576 416 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A1P12109 GLRXP1-201ENST00000423261 334 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A1P12109 OR2B7P-201ENST00000429302 934 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 RPL7AP49-201ENST00000429522 581 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AL591438.1-201ENST00000433508 581 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AC138761.5-201ENST00000433967 325 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 RPS29P9-201ENST00000440360 171 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 EPS15P1-201ENST00000448836 336 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 PAXBP1P1-201ENST00000449315 447 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AC010733.1-201ENST00000451515 401 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 BX248409.1-201ENST00000455497 255 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 RPL21P129-201ENST00000491732 478 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 RN7SL604P-201ENST00000492589 296 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC074344.1-201ENST00000512823 224 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.52□□□□□ -1.53
COL6A1P12109 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC5.52□□□□□ -1.53
COL6A1P12109 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.52□□□□□ -1.53
COL6A1P12109 AP005262.1-201ENST00000582646 997 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 MTND5P26-201ENST00000426018 1752 ntBASIC5.52□□□□□ -1.53
COL6A1P12109 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL6A1P12109 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.52□□□□□ -1.53
COL6A1P12109 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
COL6A1P12109 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL6A1P12109 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 RNU5D-1-201ENST00000363299 116 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 RNU6-501P-201ENST00000364072 100 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL6A1P12109 Y_RNA.408-201ENST00000383987 102 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 SNORA37-201ENST00000384504 129 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 Y_RNA.582-201ENST00000391023 95 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 RPL17P50-201ENST00000396131 546 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AL161909.1-201ENST00000397390 712 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 HMGN1P14-201ENST00000412459 517 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.51□□□□□ -1.53
COL6A1P12109 LARP1BP3-201ENST00000437229 869 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 DNAJC19P4-201ENST00000440115 345 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AL360089.1-201ENST00000442260 436 ntTSL 5 BASIC5.51□□□□□ -1.53
COL6A1P12109 MTATP6P30-201ENST00000443540 664 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC112653.1-201ENST00000443851 386 ntBASIC5.51□□□□□ -1.53
COL6A1P12109 AC009987.1-201ENST00000446888 806 ntTSL 5 BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms