Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 STX3-204ENST00000530221 534 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC3.83□□□□□ -1.8
SDC3O75056 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC3.83□□□□□ -1.8
SDC3O75056 LINC01479-202ENST00000546170 444 ntTSL 2 BASIC3.83□□□□□ -1.8
SDC3O75056 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.83□□□□□ -1.8
SDC3O75056 CCNG2P1-201ENST00000549521 1000 ntBASIC3.83□□□□□ -1.8
SDC3O75056 ARL1-211ENST00000551828 776 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 CBX3P5-201ENST00000552017 521 ntBASIC3.83□□□□□ -1.8
SDC3O75056 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 AC005899.4-201ENST00000581915 514 ntTSL 4 BASIC3.83□□□□□ -1.8
SDC3O75056 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 uc_338.32-201ENST00000615087 172 ntBASIC3.83□□□□□ -1.8
SDC3O75056 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 AL391261.4-201ENST00000616012 481 ntBASIC3.83□□□□□ -1.8
SDC3O75056 AF001550.2-201ENST00000636643 217 ntBASIC3.83□□□□□ -1.8
SDC3O75056 FAM157B-203ENST00000639350 358 ntBASIC3.83□□□□□ -1.8
SDC3O75056 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 NSRP1P1-201ENST00000444067 1693 ntBASIC3.83□□□□□ -1.8
SDC3O75056 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 FLG-AS1-205ENST00000445097 2857 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
SDC3O75056 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.83□□□□□ -1.8
SDC3O75056 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SDC3O75056 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 ABCC9-201ENST00000261200 8293 ntAPPRIS P5 TSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 AC095050.2-201ENST00000510748 1458 ntBASIC3.82□□□□□ -1.8
SDC3O75056 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SDC3O75056 RNA5SP119-201ENST00000362715 117 ntBASIC3.82□□□□□ -1.8
SDC3O75056 RNU6-354P-201ENST00000383862 107 ntBASIC3.82□□□□□ -1.8
SDC3O75056 RNU6-610P-201ENST00000384264 107 ntBASIC3.82□□□□□ -1.8
SDC3O75056 RNU2-21P-201ENST00000410368 188 ntBASIC3.82□□□□□ -1.8
SDC3O75056 RPL7AP73-201ENST00000413490 353 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC3O75056 AC093698.1-201ENST00000423843 571 ntBASIC3.82□□□□□ -1.8
SDC3O75056 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
SDC3O75056 RPL7P4-203ENST00000430239 730 ntBASIC3.82□□□□□ -1.8
SDC3O75056 HMGN2P31-201ENST00000432430 273 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC3O75056 AC006994.1-201ENST00000438212 839 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC009263.1-201ENST00000441193 1239 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 PPIAP3-201ENST00000450588 505 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC3O75056 GTF2IP12-201ENST00000456547 356 ntBASIC3.82□□□□□ -1.8
SDC3O75056 RPL21P11-201ENST00000461458 483 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC087385.1-201ENST00000475062 312 ntBASIC3.82□□□□□ -1.8
SDC3O75056 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AC026726.1-201ENST00000512859 601 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC3O75056 SOD1P3-201ENST00000518682 454 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC134043.1-201ENST00000521204 638 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AC007991.1-201ENST00000522680 631 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC092851.1-201ENST00000535964 478 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC3.82□□□□□ -1.8
SDC3O75056 AC095057.3-201ENST00000567102 1157 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC3.82□□□□□ -1.8
SDC3O75056 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 AC017100.2-201ENST00000584628 355 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 SRGNP1-201ENST00000603392 451 ntBASIC3.82□□□□□ -1.8
SDC3O75056 HMGB1P50-201ENST00000605814 607 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AP005229.2-201ENST00000609980 697 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC121761.2-201ENST00000617300 689 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AL139089.1-201ENST00000620372 975 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC124312.6-202ENST00000623624 418 ntBASIC3.82□□□□□ -1.8
SDC3O75056 AC080188.3-201ENST00000624842 748 ntBASIC3.82□□□□□ -1.8
SDC3O75056 MIR4496-201ENST00000635896 61 ntBASIC3.82□□□□□ -1.8
SDC3O75056 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
SDC3O75056 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
SDC3O75056 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 CRB1-201ENST00000367397 9023 ntTSL 2 BASIC3.81□□□□□ -1.8
SDC3O75056 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
SDC3O75056 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC3O75056 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC3O75056 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
SDC3O75056 RNU6-356P-201ENST00000384140 107 ntBASIC3.81□□□□□ -1.8
SDC3O75056 MIR1251-201ENST00000408552 70 ntBASIC3.81□□□□□ -1.8
SDC3O75056 MIR1183-201ENST00000408856 89 ntBASIC3.81□□□□□ -1.8
SDC3O75056 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.81□□□□□ -1.8
SDC3O75056 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC3O75056 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC3.81□□□□□ -1.8
SDC3O75056 AL139247.1-201ENST00000422768 325 ntBASIC3.81□□□□□ -1.8
SDC3O75056 AL591419.1-201ENST00000427423 339 ntBASIC3.81□□□□□ -1.8
SDC3O75056 PSMA2P3-201ENST00000429685 675 ntBASIC3.81□□□□□ -1.8
SDC3O75056 PPIAP17-201ENST00000438507 471 ntBASIC3.81□□□□□ -1.8
SDC3O75056 EXTL2P1-201ENST00000446218 416 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms