Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LINC01416-201ENST00000563553 2310 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
TRIM49D1C9J1S8 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
TRIM49D1C9J1S8 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.49□□□□□ -1.85
TRIM49D1C9J1S8 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC3.49□□□□□ -1.85
TRIM49D1C9J1S8 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.49□□□□□ -1.85
TRIM49D1C9J1S8 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 BX248415.1-201ENST00000367421 1043 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 RNU6-481P-201ENST00000384194 107 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PPIAP31-201ENST00000405422 495 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 DBIP2-201ENST00000419076 262 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 MTND2P9-201ENST00000422293 931 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 MTCYBP29-201ENST00000436327 1006 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 RPL7P47-201ENST00000497299 556 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 RN7SKP141-201ENST00000516167 338 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 SNORA70.18-201ENST00000516696 98 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC107934.2-201ENST00000518653 310 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 OR8R1P-201ENST00000543943 764 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC011458.1-201ENST00000604034 617 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 MIR8084-201ENST00000614105 89 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC245389.2-201ENST00000616023 576 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC242843.1-201ENST00000618702 573 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PACRG-211ENST00000621363 360 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 U4.6-201ENST00000621618 127 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC145207.9-201ENST00000623802 325 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AC009452.1-201ENST00000640823 606 ntBASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.48□□□□□ -1.85
TRIM49D1C9J1S8 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC007496.3-201ENST00000624987 3443 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL118496.1-201ENST00000440201 1812 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 XIAPP3-201ENST00000312918 795 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 SNORD9-201ENST00000362566 104 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 RPL22P22-201ENST00000395439 379 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 RSL24D1P1-201ENST00000404972 493 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC093578.1-201ENST00000415219 368 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC017083.1-201ENST00000428093 483 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 PTP4A1P3-201ENST00000433661 420 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 HMGB3P8-201ENST00000449709 577 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 HMGN1P18-201ENST00000457642 277 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC010683.1-201ENST00000473673 378 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 TRBV8-2-201ENST00000475637 270 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC093801.2-201ENST00000503966 1050 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AP003102.1-201ENST00000525638 661 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 MED28P5-201ENST00000528254 438 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC022240.1-201ENST00000532065 684 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 PDCL2P2-201ENST00000533651 189 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 OSBPL9P3-201ENST00000534523 595 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC233266.2-201ENST00000567067 528 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 MIR3186-201ENST00000577404 85 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC067852.3-201ENST00000589177 561 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 VN1R79P-201ENST00000593540 513 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC022146.1-201ENST00000595307 847 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL020997.2-201ENST00000602607 184 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AC026741.1-201ENST00000605892 482 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL096803.3-201ENST00000609032 532 ntBASIC3.47□□□□□ -1.85
TRIM49D1C9J1S8 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 83.3 ms