Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AC008694.2-201ENST00000517591 306 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MTND4P7-201ENST00000523876 130 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AP001922.4-201ENST00000526967 290 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 DEFB109D-201ENST00000529497 240 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC126177.3-201ENST00000551839 688 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC024619.4-201ENST00000580924 316 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC006254.3-201ENST00000603353 884 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AP001521.2-201ENST00000608772 546 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 uc_338.29-201ENST00000615099 168 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AL122125.1-201ENST00000616999 600 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC126177.8-201ENST00000618339 1015 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC068831.8-201ENST00000620171 435 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 C2orf27A-204ENST00000623058 969 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC024651.2-201ENST00000562480 2098 ntBASIC4.8□□□□□ -1.64
CCDC140Q96MF4 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 LARP7-210ENST00000509061 2332 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 GNS-202ENST00000418919 4877 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC4.8□□□□□ -1.64
CCDC140Q96MF4 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC073136.1-201ENST00000449426 2884 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LINC01527-201ENST00000419578 1997 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 FRG1CP-201ENST00000358464 769 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RNU6-1249P-201ENST00000363237 111 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 SNORA63-201ENST00000363450 132 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.394-201ENST00000383942 103 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 Y_RNA.576-201ENST00000384781 102 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 MIR135A2-201ENST00000384854 100 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC013442.1-201ENST00000397347 228 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RPL21P67-201ENST00000402896 478 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL139805.1-201ENST00000407837 289 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 SULT1C2-204ENST00000409880 1206 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RNA5SP251-201ENST00000410614 137 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RN7SKP144-201ENST00000411108 279 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 BX323014.1-201ENST00000412876 237 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 MTND6P18-201ENST00000439477 513 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC079612.2-201ENST00000446029 348 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RNU7-180P-201ENST00000459240 63 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RN7SL552P-201ENST00000462094 276 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC098818.1-201ENST00000478593 252 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC083904.1-201ENST00000487828 231 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RN7SL568P-201ENST00000493069 298 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RPS24P16-201ENST00000497294 392 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC091885.1-201ENST00000506658 268 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 MTCO3P9-201ENST00000506989 781 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC117522.3-201ENST00000507974 584 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC104806.1-201ENST00000508720 308 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RNU6-390P-201ENST00000516259 103 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RN7SKP99-201ENST00000517028 307 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 MYL12AP1-201ENST00000518490 515 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 LRTOMT-218ENST00000541614 726 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 OLR1-209ENST00000543993 822 ntTSL 2 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AL121821.2-201ENST00000556081 394 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 OR1F2P-201ENST00000570470 933 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 RNU4ATAC-201ENST00000580972 127 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 AC020916.2-201ENST00000591242 360 ntBASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.79□□□□□ -1.64
CCDC140Q96MF4 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms