Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 Y_RNA.132-201ENST00000363421 102 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RNU6-1297P-201ENST00000384415 104 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AL591416.1-201ENST00000404015 867 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RNU4-26P-201ENST00000410270 107 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 HSD17B7P1-201ENST00000412419 1017 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RPS15AP12-201ENST00000419498 388 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AL035660.1-201ENST00000422041 222 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 CHIAP3-201ENST00000423668 1133 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC126120.1-201ENST00000431082 470 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 PPP1R2P5-201ENST00000457256 603 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RNU1-88P-201ENST00000459274 128 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RPS17P15-201ENST00000475609 349 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 HSPD1P15-201ENST00000505573 1122 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC018797.3-201ENST00000513388 1241 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RNU4-29P-201ENST00000515943 174 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 NCAPGP2-201ENST00000557911 754 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC012313.1-202ENST00000597309 423 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC136443.5-201ENST00000603741 370 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC093388.1-201ENST00000609166 430 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC037198.3-201ENST00000616754 526 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 CYP3A51P-201ENST00000633513 256 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 OR2L1P-202ENST00000641567 1023 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC140479.2-201ENST00000421567 3130 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 MTND5P16-201ENST00000460269 1703 ntBASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
UBE3DQ7Z6J8 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RBPJP2-201ENST00000618187 1444 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AL159987.1-201ENST00000347911 293 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 U3.10-201ENST00000364459 214 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RNU11-201ENST00000387069 134 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 Y_RNA.579-201ENST00000390939 94 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC016769.3-201ENST00000396562 315 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RNU2-62P-201ENST00000410868 191 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RN7SKP279-201ENST00000411383 298 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC007283.2-201ENST00000424739 197 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 MEMO1P4-201ENST00000453590 386 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 HMGB1P15-201ENST00000453854 435 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 FGF7P3-201ENST00000454645 303 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC068587.1-201ENST00000483613 781 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AK3P4-201ENST00000504283 583 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC096577.1-203ENST00000506386 541 ntTSL 3 BASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 SCARNA24.1-201ENST00000516465 137 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RN7SKP70-201ENST00000516655 271 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 Y_RNA.711-201ENST00000516993 102 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 RNU6-1220P-201ENST00000517126 108 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 SNORA25.17-201ENST00000517184 124 ntBASIC5.49□□□□□ -1.53
UBE3DQ7Z6J8 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 197.9 ms