Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC5.39□□□□□ -1.55
RNF4P78317 RNU7-30P-201ENST00000516835 62 ntBASIC5.39□□□□□ -1.55
RNF4P78317 BTF3P12-201ENST00000519620 469 ntBASIC5.39□□□□□ -1.55
RNF4P78317 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
RNF4P78317 OR4R1P-201ENST00000529879 463 ntBASIC5.39□□□□□ -1.55
RNF4P78317 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 PDCD5P1-201ENST00000543528 309 ntBASIC5.39□□□□□ -1.55
RNF4P78317 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.39□□□□□ -1.55
RNF4P78317 HMGB1P6-201ENST00000569046 646 ntBASIC5.39□□□□□ -1.55
RNF4P78317 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC5.39□□□□□ -1.55
RNF4P78317 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.39□□□□□ -1.55
RNF4P78317 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.39□□□□□ -1.55
RNF4P78317 AC044873.1-201ENST00000580487 399 ntTSL 3 BASIC5.39□□□□□ -1.55
RNF4P78317 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.39□□□□□ -1.55
RNF4P78317 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC5.39□□□□□ -1.55
RNF4P78317 AC007687.1-201ENST00000602704 304 ntBASIC5.39□□□□□ -1.55
RNF4P78317 Y_RNA.812-201ENST00000610788 101 ntBASIC5.39□□□□□ -1.55
RNF4P78317 Y_RNA.784-201ENST00000613803 101 ntBASIC5.39□□□□□ -1.55
RNF4P78317 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC5.39□□□□□ -1.55
RNF4P78317 Y_RNA.787-201ENST00000616522 101 ntBASIC5.39□□□□□ -1.55
RNF4P78317 Y_RNA.780-201ENST00000617336 101 ntBASIC5.39□□□□□ -1.55
RNF4P78317 AL354950.2-201ENST00000617939 290 ntBASIC5.39□□□□□ -1.55
RNF4P78317 Y_RNA.801-201ENST00000619005 101 ntBASIC5.39□□□□□ -1.55
RNF4P78317 AC009248.2-201ENST00000619826 254 ntBASIC5.39□□□□□ -1.55
RNF4P78317 USP12-203ENST00000620323 349 ntTSL 3 BASIC5.39□□□□□ -1.55
RNF4P78317 AC090617.10-201ENST00000624308 134 ntBASIC5.39□□□□□ -1.55
RNF4P78317 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.39□□□□□ -1.55
RNF4P78317 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.39□□□□□ -1.55
RNF4P78317 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
RNF4P78317 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.39□□□□□ -1.55
RNF4P78317 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
RNF4P78317 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.39□□□□□ -1.55
RNF4P78317 RIOK3P1-201ENST00000418778 1528 ntBASIC5.38□□□□□ -1.55
RNF4P78317 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 LPAR4-201ENST00000435339 2611 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 BACH1-201ENST00000286800 5669 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
RNF4P78317 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.38□□□□□ -1.55
RNF4P78317 RNU6-74P-201ENST00000384235 107 ntBASIC5.38□□□□□ -1.55
RNF4P78317 RNU6-1207P-201ENST00000384343 107 ntBASIC5.38□□□□□ -1.55
RNF4P78317 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
RNF4P78317 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 AC012065.2-201ENST00000421295 375 ntBASIC5.38□□□□□ -1.55
RNF4P78317 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 MTCO2P12-201ENST00000427426 682 ntBASIC5.38□□□□□ -1.55
RNF4P78317 MTND6P12-201ENST00000428247 522 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AL590233.1-201ENST00000430017 456 ntBASIC5.38□□□□□ -1.55
RNF4P78317 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 AL138799.3-201ENST00000438968 350 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.38□□□□□ -1.55
RNF4P78317 EIF4EP3-201ENST00000498782 656 ntBASIC5.38□□□□□ -1.55
RNF4P78317 GAPDHP56-201ENST00000506031 988 ntBASIC5.38□□□□□ -1.55
RNF4P78317 SCARNA24.1-201ENST00000516465 137 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC107953.1-201ENST00000522216 297 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC5.38□□□□□ -1.55
RNF4P78317 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC5.38□□□□□ -1.55
RNF4P78317 AP000859.1-201ENST00000525536 307 ntBASIC5.38□□□□□ -1.55
RNF4P78317 PSMA2P1-201ENST00000526365 646 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AP003497.1-201ENST00000528472 562 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.38□□□□□ -1.55
RNF4P78317 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
RNF4P78317 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.38□□□□□ -1.55
RNF4P78317 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 AC019322.1-201ENST00000571869 389 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 AC053481.3-201ENST00000577881 843 ntBASIC5.38□□□□□ -1.55
RNF4P78317 MIR3614-201ENST00000581261 86 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.38□□□□□ -1.55
RNF4P78317 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 AL133255.1-201ENST00000606374 441 ntBASIC5.38□□□□□ -1.55
RNF4P78317 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
RNF4P78317 AC022106.2-201ENST00000620114 757 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AC068631.1-221ENST00000626006 592 ntTSL 5 BASIC5.38□□□□□ -1.55
RNF4P78317 TPTEP1-208ENST00000636884 213 ntBASIC5.38□□□□□ -1.55
RNF4P78317 AP004607.3-201ENST00000530354 3915 ntBASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms