Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC092868.3-201ENST00000560515 784 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC106785.3-201ENST00000564064 847 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AL672296.1-201ENST00000427780 2158 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC011124.1-201ENST00000521221 1762 ntTSL 2 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 TAS2R10-201ENST00000240619 1042 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 RPL32P28-201ENST00000443577 397 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC112492.1-201ENST00000449607 712 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 FGF7P3-201ENST00000454645 303 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 HMGB3P14-201ENST00000494195 599 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 RNU1-41P-201ENST00000516161 162 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 RNU1-48P-201ENST00000516400 162 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 MIR2114-201ENST00000516645 80 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC006518.1-201ENST00000541449 943 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 RNU6-84P-201ENST00000607737 102 ntBASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 UBE2E2-207ENST00000628311 267 ntTSL 5 BASIC4.01□□□□□ -1.77
CCDC88AQ3V6T2 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AC006504.1-201ENST00000562493 3666 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AC093775.1-201ENST00000624154 1868 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 SNORA7.4-201ENST00000384249 137 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 SNORD67-201ENST00000390833 111 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 RPS24P13-201ENST00000442520 397 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 Y_RNA.638-201ENST00000459374 113 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 RNA5SP356-201ENST00000515972 94 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 UBL5P2-201ENST00000583788 219 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AL034351.1-201ENST00000605288 668 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 AL157817.1-201ENST00000614264 790 ntBASIC4□□□□□ -1.77
CCDC88AQ3V6T2 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4□□□□□ -1.77
CCDC88AQ3V6T2 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 FTLP6-201ENST00000355274 422 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 SNORA71.1-201ENST00000364523 117 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 DEFB110-201ENST00000371148 384 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 RN7SL432P-201ENST00000484057 298 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 RPL23AP92-201ENST00000603609 255 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 AC100793.4-201ENST00000613683 429 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 AL450472.3-201ENST00000615578 367 ntBASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.99□□□□□ -1.77
CCDC88AQ3V6T2 ATP5C1P1-201ENST00000441945 895 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 RPL7P47-201ENST00000497299 556 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC103881.1-201ENST00000603476 538 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC006840.1-201ENST00000623069 542 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC093010.3-201ENST00000570269 15214 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 OR6C1-201ENST00000379668 1064 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 SNORA18.3-201ENST00000384122 132 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC239809.1-201ENST00000450470 217 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 RFESD-208ENST00000513950 464 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC090281.1-201ENST00000523019 276 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 ATP1B3P1-201ENST00000605365 821 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AL356321.1-201ENST00000621360 228 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AL137790.1-201ENST00000634283 177 ntBASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC88AQ3V6T2 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms