Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL359535.1-201ENST00000612100 1087 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AL355493.4-201ENST00000618530 292 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC055839.1-201ENST00000634467 498 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 ZNF137P-201ENST00000456718 1920 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AC106871.1-201ENST00000568324 3102 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 MTND5P31-201ENST00000419366 1374 ntBASIC4.38□□□□□ -1.71
COL28A1Q2UY09 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.38□□□□□ -1.71
COL28A1Q2UY09 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 KPNA2P2-201ENST00000419546 1489 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 PTER-201ENST00000298942 3448 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNA5SP391-201ENST00000363456 119 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNU6-1293P-201ENST00000384077 107 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 HDGFP1-201ENST00000405943 252 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNU6ATAC-201ENST00000408749 126 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 EIF4A1P3-201ENST00000411521 244 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 FCF1P2-201ENST00000415284 583 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LUZP4P1-201ENST00000415420 344 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 EIF4HP2-201ENST00000424380 563 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 USP9YP11-201ENST00000427537 717 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AL117339.2-201ENST00000430475 180 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AP000146.1-202ENST00000441666 441 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RPL23AP76-201ENST00000441860 458 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RPS3AP12-201ENST00000443616 753 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 HMGB3P21-201ENST00000452483 547 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC079168.2-201ENST00000453977 416 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 APOA2-207ENST00000470459 416 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC004263.1-201ENST00000479327 332 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC146944.2-203ENST00000502493 354 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 KLRA1P-201ENST00000503499 986 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 MTCYBP35-201ENST00000503630 1137 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC008837.2-201ENST00000513076 418 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC139495.1-202ENST00000513164 354 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNU6-1225P-201ENST00000516336 65 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 CA1-215ENST00000522389 551 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 DYNLL1P4-201ENST00000549314 266 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC087477.6-201ENST00000559595 843 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 MIR5699-201ENST00000578903 90 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC097467.3-207ENST00000602249 725 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 RNU6-156P-201ENST00000621869 107 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 OR6C71P-202ENST00000641886 1107 ntBASIC4.37□□□□□ -1.71
COL28A1Q2UY09 KATNA1-202ENST00000335647 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 LPAR6-209ENST00000620633 2175 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL28A1Q2UY09 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 MAPK10-304ENST00000641341 3984 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC008549.2-201ENST00000333482 706 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 RNU6-251P-201ENST00000363235 104 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 SNORD113-6-201ENST00000363345 75 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 Y_RNA.192-201ENST00000363977 102 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 RNU6-83P-201ENST00000384568 112 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AL592291.1-201ENST00000403830 352 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AL512430.2-201ENST00000406786 339 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 U3.35-201ENST00000408405 208 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 GLS-204ENST00000409428 816 ntTSL 2 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC4.36□□□□□ -1.71
COL28A1Q2UY09 BOLA3P4-201ENST00000418151 400 ntBASIC4.36□□□□□ -1.71
COL28A1Q2UY09 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 107.4 ms