Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC007688.1-201ENST00000475592 759 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC231760.1-201ENST00000498002 260 ntBASIC2.54□□□□□ -2
FOXA3P55318 TMEM248P1-201ENST00000510579 951 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 FTH1P21-201ENST00000512179 511 ntBASIC2.54□□□□□ -2
FOXA3P55318 RNU1-143P-201ENST00000516296 146 ntBASIC2.54□□□□□ -2
FOXA3P55318 RN7SKP234-201ENST00000517173 224 ntBASIC2.54□□□□□ -2
FOXA3P55318 MRPL49P2-201ENST00000521066 465 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC009643.1-201ENST00000532030 391 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 ASB8-204ENST00000536071 568 ntTSL 4 BASIC2.54□□□□□ -2
FOXA3P55318 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 AC025884.1-201ENST00000556034 378 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 MIR3939-201ENST00000582614 106 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC067852.3-201ENST00000589177 561 ntBASIC2.54□□□□□ -2
FOXA3P55318 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC2.54□□□□□ -2
FOXA3P55318 U1.23-201ENST00000610293 146 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC019176.2-201ENST00000611579 315 ntBASIC2.54□□□□□ -2
FOXA3P55318 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.54□□□□□ -2
FOXA3P55318 RNU1-68P-201ENST00000615382 146 ntBASIC2.54□□□□□ -2
FOXA3P55318 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 U1.39-201ENST00000621562 146 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC2.54□□□□□ -2
FOXA3P55318 MIR492-201ENST00000638676 116 ntBASIC2.54□□□□□ -2
FOXA3P55318 AC008264.2-201ENST00000610193 3731 ntBASIC2.54□□□□□ -2
FOXA3P55318 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 BCLAF1P1-201ENST00000505813 2752 ntBASIC2.54□□□□□ -2
FOXA3P55318 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
FOXA3P55318 HSP90AA4P-202ENST00000506915 2228 ntBASIC2.53□□□□□ -2
FOXA3P55318 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC2.53□□□□□ -2
FOXA3P55318 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA3P55318 AC107081.3-201ENST00000612715 2034 ntBASIC2.53□□□□□ -2
FOXA3P55318 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA3P55318 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
FOXA3P55318 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC2.53□□□□□ -2
FOXA3P55318 RN7SKP280-201ENST00000364196 304 ntBASIC2.53□□□□□ -2
FOXA3P55318 SNORA7.2-201ENST00000364446 145 ntBASIC2.53□□□□□ -2
FOXA3P55318 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC2.53□□□□□ -2
FOXA3P55318 MIR30B-201ENST00000384850 88 ntBASIC2.53□□□□□ -2
FOXA3P55318 GSTA12P-201ENST00000402398 508 ntBASIC2.53□□□□□ -2
FOXA3P55318 RN7SKP111-201ENST00000410349 271 ntBASIC2.53□□□□□ -2
FOXA3P55318 RNA5SP44-201ENST00000410446 133 ntBASIC2.53□□□□□ -2
FOXA3P55318 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 DBIP2-201ENST00000419076 262 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC012498.1-201ENST00000424037 437 ntBASIC2.53□□□□□ -2
FOXA3P55318 AL031736.2-201ENST00000426573 787 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC008065.1-201ENST00000428525 348 ntBASIC2.53□□□□□ -2
FOXA3P55318 ETF1P3-201ENST00000430422 1160 ntBASIC2.53□□□□□ -2
FOXA3P55318 TRIM60P3Y-201ENST00000432201 673 ntBASIC2.53□□□□□ -2
FOXA3P55318 CCNB1IP1P2-201ENST00000432876 818 ntBASIC2.53□□□□□ -2
FOXA3P55318 GOT2P5-201ENST00000433995 546 ntBASIC2.53□□□□□ -2
FOXA3P55318 RPL21P112-201ENST00000434403 463 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 HIGD1AP11-201ENST00000438361 280 ntBASIC2.53□□□□□ -2
FOXA3P55318 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA3P55318 RRM2P4-201ENST00000441721 562 ntBASIC2.53□□□□□ -2
FOXA3P55318 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 RPL7P59-201ENST00000447700 943 ntBASIC2.53□□□□□ -2
FOXA3P55318 CCRL1P1-201ENST00000449542 1053 ntBASIC2.53□□□□□ -2
FOXA3P55318 HMGN2P16-201ENST00000456802 261 ntBASIC2.53□□□□□ -2
FOXA3P55318 AL133162.1-201ENST00000463228 453 ntBASIC2.53□□□□□ -2
FOXA3P55318 RPL21P8-201ENST00000465083 535 ntBASIC2.53□□□□□ -2
FOXA3P55318 RPS29P22-201ENST00000472363 168 ntBASIC2.53□□□□□ -2
FOXA3P55318 ST13P14-201ENST00000474095 734 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC2.53□□□□□ -2
FOXA3P55318 RNU4-60P-201ENST00000517239 135 ntBASIC2.53□□□□□ -2
FOXA3P55318 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC2.53□□□□□ -2
FOXA3P55318 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC2.53□□□□□ -2
FOXA3P55318 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC2.53□□□□□ -2
FOXA3P55318 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC2.53□□□□□ -2
FOXA3P55318 AC023575.1-201ENST00000580510 358 ntBASIC2.53□□□□□ -2
FOXA3P55318 MIR5096-201ENST00000583713 70 ntBASIC2.53□□□□□ -2
FOXA3P55318 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC2.53□□□□□ -2
FOXA3P55318 AP003117.1-201ENST00000602771 554 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC008745.1-201ENST00000604064 271 ntBASIC2.53□□□□□ -2
FOXA3P55318 SNORA35B-201ENST00000607417 129 ntBASIC2.53□□□□□ -2
FOXA3P55318 U4.6-201ENST00000621618 127 ntBASIC2.53□□□□□ -2
FOXA3P55318 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
FOXA3P55318 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA3P55318 MTND5P19-201ENST00000424872 1794 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 OR8K1-201ENST00000279783 1087 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
FOXA3P55318 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
FOXA3P55318 AL121657.1-201ENST00000327215 531 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 SNORA51.4-201ENST00000364993 124 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC2.52□□□□□ -2.01
FOXA3P55318 SAR1AP2-201ENST00000392696 594 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 RNU6ATAC40P-201ENST00000408580 137 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 SDCBPP3-201ENST00000419629 891 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC012065.2-201ENST00000421295 375 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA3P55318 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC2.52□□□□□ -2.01
FOXA3P55318 AC245028.1-201ENST00000423259 256 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA3P55318 TRIM60P18-201ENST00000441518 828 ntBASIC2.52□□□□□ -2.01
FOXA3P55318 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC2.52□□□□□ -2.01
FOXA3P55318 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms