Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 LINC00824-201ENST00000517583 805 ntTSL 5 BASIC5.87□□□□□ -1.47
LIG3P49916 HMGN2P36-201ENST00000529541 409 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 AC091078.2-201ENST00000557145 559 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL138976.2-201ENST00000563989 694 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL353997.4-201ENST00000586196 166 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL035413.2-201ENST00000604801 525 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC007038.2-201ENST00000608095 740 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AC126175.1-201ENST00000617041 758 ntBASIC5.87□□□□□ -1.47
LIG3P49916 AL355974.3-201ENST00000617383 467 ntBASIC5.87□□□□□ -1.47
LIG3P49916 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.87□□□□□ -1.47
LIG3P49916 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 AC092125.1-201ENST00000562568 1995 ntBASIC5.87□□□□□ -1.47
LIG3P49916 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
LIG3P49916 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.87□□□□□ -1.47
LIG3P49916 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
LIG3P49916 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
LIG3P49916 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 MIR375-201ENST00000362103 64 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RNA5SP435-201ENST00000364044 108 ntBASIC5.86□□□□□ -1.47
LIG3P49916 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 RNU1-39P-201ENST00000383897 165 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RNU6-116P-201ENST00000384042 109 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RNU6-878P-201ENST00000384578 110 ntBASIC5.86□□□□□ -1.47
LIG3P49916 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
LIG3P49916 BTBD10P2-201ENST00000404779 676 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RNU6-908P-201ENST00000410160 94 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RNA5SP118-201ENST00000410385 109 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RN7SKP279-201ENST00000411383 298 ntBASIC5.86□□□□□ -1.47
LIG3P49916 CTSL3P-202ENST00000412179 788 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC211486.3-201ENST00000412694 621 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.86□□□□□ -1.47
LIG3P49916 AC013429.2-201ENST00000418798 781 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 USP9YP15-201ENST00000442391 422 ntBASIC5.86□□□□□ -1.47
LIG3P49916 TCEA1P1-201ENST00000449716 880 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RN7SL72P-201ENST00000460697 269 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC087879.1-201ENST00000474343 374 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RPL38P3-201ENST00000484463 213 ntBASIC5.86□□□□□ -1.47
LIG3P49916 PPIAP19-201ENST00000486414 492 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RPL7P51-201ENST00000490532 749 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC104109.1-201ENST00000498563 436 ntBASIC5.86□□□□□ -1.47
LIG3P49916 NENFP3-201ENST00000503735 313 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC5.86□□□□□ -1.47
LIG3P49916 TXNP6-201ENST00000510190 310 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 GAPDHP62-201ENST00000515313 990 ntBASIC5.86□□□□□ -1.47
LIG3P49916 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.86□□□□□ -1.47
LIG3P49916 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 IGLV3-30-201ENST00000524362 298 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 OR5AL2P-201ENST00000532185 920 ntBASIC5.86□□□□□ -1.47
LIG3P49916 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 HIF1AP1-201ENST00000553642 175 ntBASIC5.86□□□□□ -1.47
LIG3P49916 AC009396.3-201ENST00000555680 354 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 MRO-208ENST00000588444 866 ntTSL 3 BASIC5.86□□□□□ -1.47
LIG3P49916 AC093648.1-201ENST00000623546 606 ntBASIC5.86□□□□□ -1.47
LIG3P49916 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.86□□□□□ -1.47
LIG3P49916 CYP3A51P-201ENST00000633513 256 ntBASIC5.86□□□□□ -1.47
LIG3P49916 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
LIG3P49916 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
LIG3P49916 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC5.86□□□□□ -1.47
LIG3P49916 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.86□□□□□ -1.47
LIG3P49916 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 AC092447.10-201ENST00000620607 1652 ntBASIC5.85□□□□□ -1.47
LIG3P49916 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 LINC00622-201ENST00000562811 1570 ntBASIC5.85□□□□□ -1.47
LIG3P49916 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 MTCO1P7-201ENST00000419523 1542 ntBASIC5.85□□□□□ -1.47
LIG3P49916 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
LIG3P49916 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 PCAT14-202ENST00000627127 3935 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RNU5E-1-201ENST00000362477 120 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RNY3P3-201ENST00000363816 102 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RN7SKP78-201ENST00000364711 318 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RN7SKP292-201ENST00000365522 317 ntBASIC5.85□□□□□ -1.47
LIG3P49916 RN7SKP269-201ENST00000365545 319 ntBASIC5.85□□□□□ -1.47
LIG3P49916 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.85□□□□□ -1.47
LIG3P49916 MTATP6P18-201ENST00000417994 673 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms