Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AP003485.2-201ENST00000623636 610 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
COL18A1P39060 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL18A1P39060 AC087190.4-201ENST00000574616 8334 ntBASIC4.1□□□□□ -1.75
COL18A1P39060 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.1□□□□□ -1.75
COL18A1P39060 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
COL18A1P39060 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL18A1P39060 RNU1-89P-201ENST00000384592 164 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 AL031679.1-201ENST00000400616 525 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 AL513174.1-201ENST00000423182 629 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.09□□□□□ -1.75
COL18A1P39060 RPL12P26-201ENST00000452430 487 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC4.09□□□□□ -1.75
COL18A1P39060 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.09□□□□□ -1.75
COL18A1P39060 AL139174.1-201ENST00000531489 886 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
COL18A1P39060 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.09□□□□□ -1.75
COL18A1P39060 AC104763.2-201ENST00000604179 382 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 OR2AS2P-201ENST00000606902 342 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC4.09□□□□□ -1.75
COL18A1P39060 AC244205.2-202ENST00000635781 342 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 ZNF826P-207ENST00000622273 1910 ntBASIC4.09□□□□□ -1.75
COL18A1P39060 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
COL18A1P39060 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
COL18A1P39060 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL18A1P39060 AL353692.2-201ENST00000407054 335 ntBASIC4.09□□□□□ -1.76
COL18A1P39060 RN7SKP222-201ENST00000410651 315 ntBASIC4.09□□□□□ -1.76
COL18A1P39060 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
COL18A1P39060 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC4.09□□□□□ -1.76
COL18A1P39060 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC4.09□□□□□ -1.76
COL18A1P39060 GOLGA5P1-201ENST00000507317 980 ntBASIC4.09□□□□□ -1.76
COL18A1P39060 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.09□□□□□ -1.76
COL18A1P39060 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC4.09□□□□□ -1.76
COL18A1P39060 AL359693.1-201ENST00000614959 2407 ntBASIC4.09□□□□□ -1.76
COL18A1P39060 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
COL18A1P39060 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.08□□□□□ -1.76
COL18A1P39060 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
COL18A1P39060 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.08□□□□□ -1.76
COL18A1P39060 AC112653.1-201ENST00000443851 386 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 MTCO3P16-201ENST00000454456 754 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 SYT14P1-201ENST00000481459 721 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 AC093755.1-201ENST00000512950 1023 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 RNA5SP367-201ENST00000516557 118 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 snoU109.6-201ENST00000516831 118 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.08□□□□□ -1.76
COL18A1P39060 AC016866.2-201ENST00000585251 502 ntTSL 2 BASIC4.08□□□□□ -1.76
COL18A1P39060 NRBF2P5-201ENST00000603087 788 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 HMGB1P50-201ENST00000605814 607 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 AL359715.5-201ENST00000623431 443 ntBASIC4.08□□□□□ -1.76
COL18A1P39060 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
COL18A1P39060 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
COL18A1P39060 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.08□□□□□ -1.76
COL18A1P39060 MIR22-201ENST00000362190 85 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC4.07□□□□□ -1.76
COL18A1P39060 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC4.07□□□□□ -1.76
COL18A1P39060 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.07□□□□□ -1.76
COL18A1P39060 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC4.07□□□□□ -1.76
COL18A1P39060 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC034159.1-201ENST00000513885 583 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC009237.17-201ENST00000618111 748 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AC007336.1-201ENST00000576365 3828 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.07□□□□□ -1.76
COL18A1P39060 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL18A1P39060 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC116096.1-201ENST00000566804 2314 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL18A1P39060 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL18A1P39060 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL18A1P39060 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.07□□□□□ -1.76
COL18A1P39060 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.07□□□□□ -1.76
COL18A1P39060 RN7SL432P-201ENST00000484057 298 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AL157394.1-201ENST00000562983 1224 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 CYCSP39-201ENST00000565821 309 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC4.07□□□□□ -1.76
COL18A1P39060 AC139713.2-210ENST00000641741 992 ntBASIC4.07□□□□□ -1.76
COL18A1P39060 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.06□□□□□ -1.76
COL18A1P39060 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL18A1P39060 THAP12P8-201ENST00000447914 2115 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 AC020633.1-201ENST00000468439 2247 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 AC104297.1-201ENST00000393779 870 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 CST9LP2-201ENST00000437612 320 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.06□□□□□ -1.76
COL18A1P39060 RNU6-1334P-201ENST00000516032 105 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 MIR2276-201ENST00000516886 89 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 FTH1P11-201ENST00000517577 551 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 COX6B1P6-201ENST00000522347 255 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 AC015871.2-201ENST00000603605 948 ntBASIC4.06□□□□□ -1.76
COL18A1P39060 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL18A1P39060 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL18A1P39060 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.05□□□□□ -1.76
COL18A1P39060 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.05□□□□□ -1.76
COL18A1P39060 OR1S2-201ENST00000302592 978 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC4.05□□□□□ -1.76
COL18A1P39060 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.05□□□□□ -1.76
COL18A1P39060 AP002088.1-201ENST00000382740 395 ntBASIC4.05□□□□□ -1.76
COL18A1P39060 RPL7P25-201ENST00000404151 721 ntBASIC4.05□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms