Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SRSF1P1-201ENST00000424058 520 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AL662874.1-201ENST00000426065 230 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 RPL12P17-201ENST00000432393 498 ntBASIC4.95□□□□□ -1.62
MSX2P35548 PPIAP13-201ENST00000434706 478 ntBASIC4.95□□□□□ -1.62
MSX2P35548 GAPDHP17-201ENST00000449858 1001 ntBASIC4.95□□□□□ -1.62
MSX2P35548 BX322784.1-201ENST00000455793 1077 ntBASIC4.95□□□□□ -1.62
MSX2P35548 NF1P3-201ENST00000457709 450 ntBASIC4.95□□□□□ -1.62
MSX2P35548 RPL38P1-201ENST00000460914 211 ntBASIC4.95□□□□□ -1.62
MSX2P35548 RN7SL189P-201ENST00000468631 289 ntBASIC4.95□□□□□ -1.62
MSX2P35548 RN7SL447P-201ENST00000494711 245 ntBASIC4.95□□□□□ -1.62
MSX2P35548 HMGN1P12-201ENST00000499125 195 ntBASIC4.95□□□□□ -1.62
MSX2P35548 HMGB1P29-201ENST00000505659 499 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AC097173.1-201ENST00000505862 819 ntBASIC4.95□□□□□ -1.62
MSX2P35548 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
MSX2P35548 RFPL4AP5-201ENST00000514977 504 ntBASIC4.95□□□□□ -1.62
MSX2P35548 SNORA43.3-201ENST00000517240 103 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AC105031.1-201ENST00000518550 476 ntBASIC4.95□□□□□ -1.62
MSX2P35548 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.95□□□□□ -1.62
MSX2P35548 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.95□□□□□ -1.62
MSX2P35548 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.95□□□□□ -1.62
MSX2P35548 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.95□□□□□ -1.62
MSX2P35548 SUGT1P3-202ENST00000604259 383 ntBASIC4.95□□□□□ -1.62
MSX2P35548 AC008115.3-201ENST00000614874 549 ntBASIC4.95□□□□□ -1.62
MSX2P35548 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC4.95□□□□□ -1.62
MSX2P35548 AL136221.1-201ENST00000621449 509 ntBASIC4.95□□□□□ -1.62
MSX2P35548 TEX41-254ENST00000626394 423 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 ASNSP1-204ENST00000641977 1664 ntBASIC4.95□□□□□ -1.62
MSX2P35548 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.95□□□□□ -1.62
MSX2P35548 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.95□□□□□ -1.62
MSX2P35548 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
MSX2P35548 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX2P35548 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
MSX2P35548 AC006210.2-201ENST00000367074 1545 ntBASIC4.94□□□□□ -1.62
MSX2P35548 MAPK10-349ENST00000641767 3661 ntBASIC4.94□□□□□ -1.62
MSX2P35548 Y_RNA.160-201ENST00000363677 92 ntBASIC4.94□□□□□ -1.62
MSX2P35548 RN7SKP275-201ENST00000364626 301 ntBASIC4.94□□□□□ -1.62
MSX2P35548 MT-TD-201ENST00000387419 68 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC013442.1-201ENST00000397347 228 ntBASIC4.94□□□□□ -1.62
MSX2P35548 VN1R8P-201ENST00000407739 893 ntBASIC4.94□□□□□ -1.62
MSX2P35548 SNORA11B-201ENST00000408175 129 ntBASIC4.94□□□□□ -1.62
MSX2P35548 RNU2-65P-201ENST00000410162 185 ntBASIC4.94□□□□□ -1.62
MSX2P35548 RNU4-55P-201ENST00000410731 137 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 RPL36AP10-201ENST00000421785 322 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC4.94□□□□□ -1.62
MSX2P35548 AL358934.1-201ENST00000432346 324 ntBASIC4.94□□□□□ -1.62
MSX2P35548 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
MSX2P35548 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX2P35548 RPL35AP21-201ENST00000437667 333 ntBASIC4.94□□□□□ -1.62
MSX2P35548 GAPDHP58-201ENST00000438477 1006 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC092013.1-201ENST00000438795 332 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 TRGVB-201ENST00000453257 471 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC092757.1-201ENST00000467293 467 ntBASIC4.94□□□□□ -1.62
MSX2P35548 ACTR3P3-201ENST00000480448 893 ntBASIC4.94□□□□□ -1.62
MSX2P35548 LSM3P4-201ENST00000502948 309 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC024589.1-201ENST00000512207 263 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC026412.2-201ENST00000512270 1075 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX2P35548 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 IGKV2-36-201ENST00000519999 223 ntBASIC4.94□□□□□ -1.62
MSX2P35548 HIGD1AP6-201ENST00000521833 279 ntBASIC4.94□□□□□ -1.62
MSX2P35548 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.94□□□□□ -1.62
MSX2P35548 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 AC123904.3-201ENST00000547218 814 ntBASIC4.94□□□□□ -1.62
MSX2P35548 BNIP3P1-201ENST00000547295 580 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 AC093519.1-201ENST00000566109 298 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC092121.1-201ENST00000569452 202 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AL391840.1-201ENST00000571144 367 ntBASIC4.94□□□□□ -1.62
MSX2P35548 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 RN7SL708P-201ENST00000580952 299 ntBASIC4.94□□□□□ -1.62
MSX2P35548 RN7SL435P-201ENST00000584418 282 ntBASIC4.94□□□□□ -1.62
MSX2P35548 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.94□□□□□ -1.62
MSX2P35548 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.94□□□□□ -1.62
MSX2P35548 VN1R84P-201ENST00000593697 235 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms