Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.68□□□□□ -1.5
COL8A1P27658 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.68□□□□□ -1.5
COL8A1P27658 RPS23P9-201ENST00000448848 438 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 LINC01789-202ENST00000455614 491 ntTSL 3 BASIC5.68□□□□□ -1.5
COL8A1P27658 TRBVB-201ENST00000477100 408 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AC090686.1-201ENST00000481577 749 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC5.68□□□□□ -1.5
COL8A1P27658 Y_RNA.667-201ENST00000516212 107 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNU4-71P-201ENST00000516258 113 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNA5SP438-201ENST00000516561 112 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RNU6-307P-201ENST00000516743 106 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AC022559.1-201ENST00000520905 205 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 IGKV2-18-201ENST00000522607 343 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AC040926.1-201ENST00000530195 238 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AL049839.1-201ENST00000556151 657 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 NPM1P42-201ENST00000560329 862 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 AC018552.3-201ENST00000567416 561 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 FAM106CP-201ENST00000582212 507 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 AC118658.2-201ENST00000618697 459 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 AC091925.2-201ENST00000625059 256 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 LINC02495-203ENST00000636704 242 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RRS1-AS1-201ENST00000499642 4366 ntTSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC5.68□□□□□ -1.5
COL8A1P27658 SNTN-203ENST00000496807 3746 ntTSL 4 BASIC5.68□□□□□ -1.5
COL8A1P27658 AC123769.1-201ENST00000530992 3192 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 RACGAP1P-201ENST00000550663 1879 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL8A1P27658 ESF1-201ENST00000202816 3216 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 PABPC1P7-201ENST00000413177 1513 ntBASIC5.68□□□□□ -1.5
COL8A1P27658 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC5.68□□□□□ -1.5
COL8A1P27658 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 KCNMB3P1-202ENST00000493696 3389 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 DLC1-215ENST00000520226 3556 ntTSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 ZNF333-203ENST00000540689 3595 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 MAPK10-365ENST00000641902 3825 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 HABP2-201ENST00000351270 3009 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.67□□□□□ -1.5
COL8A1P27658 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
COL8A1P27658 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 KPNA2P2-201ENST00000419546 1489 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 RN7SKP292-201ENST00000365522 317 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 AP000580.1-201ENST00000404439 358 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 RNU2-51P-201ENST00000410708 197 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 RNU6-55P-201ENST00000411092 107 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 RPS21P8-201ENST00000413365 247 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 AC096632.1-201ENST00000427395 310 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 MYL8P-204ENST00000431574 518 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC023141.3-201ENST00000436698 278 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 DEFA11P-201ENST00000446470 261 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 NDUFB1P2-201ENST00000449477 176 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AL162388.1-201ENST00000450912 352 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 AC093852.1-201ENST00000503587 266 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 AC083906.1-201ENST00000509298 406 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC146944.3-201ENST00000509969 371 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 TXNP6-201ENST00000510190 310 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 SCARNA16.2-201ENST00000516520 172 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 SNORA40.14-201ENST00000516543 86 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC5.67□□□□□ -1.5
COL8A1P27658 DEFB109D-201ENST00000529497 240 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AP000907.2-201ENST00000530827 353 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.67□□□□□ -1.5
COL8A1P27658 MIR5583-1-201ENST00000580941 59 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 MAGOH2P-202ENST00000584384 429 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 AC015712.7-201ENST00000615211 635 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 NAA60-237ENST00000615865 326 ntTSL 5 BASIC5.67□□□□□ -1.5
COL8A1P27658 AP005431.1-201ENST00000618479 319 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC5.67□□□□□ -1.5
COL8A1P27658 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC5.67□□□□□ -1.5
COL8A1P27658 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC5.67□□□□□ -1.5
COL8A1P27658 RGPD1-201ENST00000398193 5425 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.67□□□□□ -1.5
COL8A1P27658 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 ZNF841-201ENST00000389534 3503 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 AL359195.2-201ENST00000623657 4412 ntBASIC5.67□□□□□ -1.5
COL8A1P27658 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 LYSMD3-203ENST00000500869 3863 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL8A1P27658 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms