Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC112653.1-201ENST00000443851 386 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 MTCO3P16-201ENST00000454456 754 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 SYT14P1-201ENST00000481459 721 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.92□□□□□ -1.78
COL5A3P25940 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.92□□□□□ -1.78
COL5A3P25940 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.92□□□□□ -1.78
COL5A3P25940 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.92□□□□□ -1.78
COL5A3P25940 AC015871.2-201ENST00000603605 948 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AL590240.3-201ENST00000621416 943 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AP003485.2-201ENST00000623636 610 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 AL359757.2-201ENST00000624309 274 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
COL5A3P25940 TTC39DP-201ENST00000416781 1688 ntBASIC3.92□□□□□ -1.78
COL5A3P25940 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL5A3P25940 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
COL5A3P25940 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL5A3P25940 AC002524.1-201ENST00000411687 547 ntBASIC3.91□□□□□ -1.78
COL5A3P25940 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC3.91□□□□□ -1.78
COL5A3P25940 AC034159.1-201ENST00000513885 583 ntBASIC3.91□□□□□ -1.78
COL5A3P25940 MIR4738-201ENST00000579134 87 ntBASIC3.91□□□□□ -1.78
COL5A3P25940 AC007619.2-201ENST00000605743 379 ntBASIC3.91□□□□□ -1.78
COL5A3P25940 OR4K13-202ENST00000641664 5980 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
COL5A3P25940 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
COL5A3P25940 PROS2P-201ENST00000474651 1951 ntBASIC3.91□□□□□ -1.78
COL5A3P25940 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.91□□□□□ -1.78
COL5A3P25940 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A3P25940 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A3P25940 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A3P25940 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.9□□□□□ -1.78
COL5A3P25940 RPL7P25-201ENST00000404151 721 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 CST9LP2-201ENST00000437612 320 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A3P25940 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.9□□□□□ -1.78
COL5A3P25940 AL136097.1-201ENST00000456945 913 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 RPL31P50-201ENST00000471002 296 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 RPS26P24-201ENST00000497656 331 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 SNORA70.19-201ENST00000516717 90 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 NARSP2-201ENST00000518524 679 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 AL139174.1-201ENST00000531489 886 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC3.9□□□□□ -1.78
COL5A3P25940 AC018552.3-201ENST00000567416 561 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC3.9□□□□□ -1.78
COL5A3P25940 AC231759.1-201ENST00000616455 597 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
COL5A3P25940 AC244205.2-202ENST00000635781 342 ntBASIC3.9□□□□□ -1.78
COL5A3P25940 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.9□□□□□ -1.79
COL5A3P25940 AC007336.1-201ENST00000576365 3828 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.9□□□□□ -1.79
COL5A3P25940 PTP4A1P3-201ENST00000433661 420 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.9□□□□□ -1.79
COL5A3P25940 AL589765.3-201ENST00000446084 462 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 TRBV8-2-201ENST00000475637 270 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 HIGD1AP13-201ENST00000509878 289 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
COL5A3P25940 MIR3945-201ENST00000581853 98 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.9□□□□□ -1.79
COL5A3P25940 AC104984.5-201ENST00000586878 94 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 AC024153.1-201ENST00000603103 365 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 AL034351.1-201ENST00000605288 668 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 AL132656.3-201ENST00000606384 1595 ntBASIC3.9□□□□□ -1.79
COL5A3P25940 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
COL5A3P25940 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A3P25940 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A3P25940 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
COL5A3P25940 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A3P25940 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A3P25940 MIR22-201ENST00000362190 85 ntBASIC3.89□□□□□ -1.79
COL5A3P25940 RNU1-89P-201ENST00000384592 164 ntBASIC3.89□□□□□ -1.79
COL5A3P25940 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.89□□□□□ -1.79
COL5A3P25940 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.89□□□□□ -1.79
COL5A3P25940 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A3P25940 AC010486.1-201ENST00000511793 424 ntBASIC3.89□□□□□ -1.79
COL5A3P25940 RNA5SP367-201ENST00000516557 118 ntBASIC3.89□□□□□ -1.79
COL5A3P25940 CHCHD7-209ENST00000519367 442 ntTSL 3 BASIC3.89□□□□□ -1.79
COL5A3P25940 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A3P25940 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
COL5A3P25940 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
COL5A3P25940 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.88□□□□□ -1.79
COL5A3P25940 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A3P25940 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
COL5A3P25940 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.88□□□□□ -1.79
COL5A3P25940 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A3P25940 AP002088.1-201ENST00000382740 395 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 AC104297.1-201ENST00000393779 870 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 ARF4P3-201ENST00000397387 509 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 AL592148.1-201ENST00000413568 445 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 AC019097.1-201ENST00000424783 735 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 SEPT7P3-201ENST00000455017 621 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC3.88□□□□□ -1.79
COL5A3P25940 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC3.88□□□□□ -1.79
COL5A3P25940 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
COL5A3P25940 AL359693.1-201ENST00000614959 2407 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL5A3P25940 AL136360.1-201ENST00000503377 1900 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 MTCO1P24-201ENST00000515438 1558 ntBASIC3.88□□□□□ -1.79
COL5A3P25940 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms