Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC008278.2-201ENST00000438178 409 ntTSL 3 BASIC5.62□□□□□ -1.51
HMGB1P09429 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.62□□□□□ -1.51
HMGB1P09429 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.62□□□□□ -1.51
HMGB1P09429 CFTRP1-201ENST00000456646 183 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 SCARNA10-201ENST00000459255 330 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 RN7SL329P-201ENST00000467740 299 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.62□□□□□ -1.51
HMGB1P09429 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC5.62□□□□□ -1.51
HMGB1P09429 AC090453.1-201ENST00000495560 436 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC025164.1-201ENST00000496249 478 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC114981.1-201ENST00000503897 678 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 SCARNA22-201ENST00000503991 125 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 COX7A2P2-201ENST00000505291 250 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC5.62□□□□□ -1.51
HMGB1P09429 AC022861.1-201ENST00000522981 663 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC5.62□□□□□ -1.51
HMGB1P09429 AL512347.1-201ENST00000566420 503 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 MIR4644-201ENST00000579929 84 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 RN7SL52P-201ENST00000584271 284 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC011477.2-201ENST00000590697 921 ntTSL 2 BASIC5.62□□□□□ -1.51
HMGB1P09429 AC018695.3-201ENST00000602617 408 ntTSL 2 BASIC5.62□□□□□ -1.51
HMGB1P09429 RPP40P2-201ENST00000603596 712 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC011458.1-201ENST00000604034 617 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC131235.4-201ENST00000609288 620 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC231657.1-201ENST00000624313 397 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
HMGB1P09429 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HMGB1P09429 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
HMGB1P09429 MAPK10-263ENST00000641052 4307 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 AC087190.4-201ENST00000574616 8334 ntBASIC5.62□□□□□ -1.51
HMGB1P09429 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
HMGB1P09429 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
HMGB1P09429 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
HMGB1P09429 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.62□□□□□ -1.51
HMGB1P09429 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 RN7SKP149-201ENST00000363008 344 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 DHFRP6-201ENST00000401776 268 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AL109941.1-201ENST00000401925 229 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC5.61□□□□□ -1.51
HMGB1P09429 VN1R8P-201ENST00000407739 893 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 RNU2-47P-201ENST00000410649 186 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 MTATP6P27-201ENST00000416987 621 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC099677.1-201ENST00000420575 175 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC5.61□□□□□ -1.51
HMGB1P09429 ATP5F1P1-201ENST00000433775 569 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 PSMD10P3-201ENST00000437000 448 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.61□□□□□ -1.51
HMGB1P09429 MUPP-201ENST00000438111 566 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 HSPE1P28-201ENST00000443139 211 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 VN1R32P-201ENST00000452234 905 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 TRGVB-201ENST00000453257 471 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 SUMO2P2-201ENST00000456482 255 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC5.61□□□□□ -1.51
HMGB1P09429 RPL7AP28-201ENST00000464513 571 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 IRF5P1-201ENST00000504852 2164 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC5.61□□□□□ -1.51
HMGB1P09429 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 AC110775.1-201ENST00000513721 462 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC5.61□□□□□ -1.51
HMGB1P09429 AC134698.5-201ENST00000519444 336 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 OR7E13P-201ENST00000526052 910 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 SNRPGP16-201ENST00000533275 226 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC099786.3-201ENST00000565735 1410 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.61□□□□□ -1.51
HMGB1P09429 AC025682.1-201ENST00000582389 437 ntTSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 CCDC58P3-201ENST00000590792 430 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC080013.4-201ENST00000607624 649 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC103710.3-201ENST00000608157 948 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 AC025588.4-201ENST00000615802 908 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC015967.1-201ENST00000619893 476 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 AC095031.1-201ENST00000623685 672 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 AC116618.1-201ENST00000634617 774 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 CCSER2-210ENST00000543283 5888 ntTSL 2 BASIC5.61□□□□□ -1.51
HMGB1P09429 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
HMGB1P09429 AC007256.1-201ENST00000392253 2765 ntBASIC5.61□□□□□ -1.51
HMGB1P09429 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.61□□□□□ -1.51
HMGB1P09429 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.6□□□□□ -1.51
HMGB1P09429 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.6□□□□□ -1.51
HMGB1P09429 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 AL442639.1-201ENST00000625030 1899 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
HMGB1P09429 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.6□□□□□ -1.51
HMGB1P09429 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC5.6□□□□□ -1.51
HMGB1P09429 OR5BR1P-201ENST00000524992 1330 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
HMGB1P09429 SNORD6-201ENST00000365444 73 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 RNU6-906P-201ENST00000384700 70 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 TAF9BP1-201ENST00000396646 746 ntBASIC5.6□□□□□ -1.51
HMGB1P09429 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.6□□□□□ -1.51
HMGB1P09429 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms