Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 AL512303.1-201ENST00000458693 465 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 SCARNA10-201ENST00000459255 330 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 RPL5P24-201ENST00000463742 885 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC010618.1-201ENST00000469924 477 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC109327.1-201ENST00000471666 403 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 RPL21P6-201ENST00000479171 504 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 RPS6P4-201ENST00000494693 758 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC010587.2-201ENST00000511727 448 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC092436.2-201ENST00000515188 411 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC3.94□□□□□ -1.78
LMX1BO60663 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 PTS-202ENST00000524931 696 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC027807.1-201ENST00000559921 996 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC023575.1-201ENST00000580510 358 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.94□□□□□ -1.78
LMX1BO60663 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC103881.1-201ENST00000603476 538 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AL160290.3-201ENST00000604869 165 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC010201.1-201ENST00000605051 540 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 AC091905.2-201ENST00000623143 306 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC3.94□□□□□ -1.78
LMX1BO60663 U3.53-201ENST00000628922 216 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 ARHGAP42P1-201ENST00000507474 1976 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 NXPH1-205ENST00000602349 1953 ntBASIC3.94□□□□□ -1.78
LMX1BO60663 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
LMX1BO60663 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC3.94□□□□□ -1.78
LMX1BO60663 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.93□□□□□ -1.78
LMX1BO60663 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.93□□□□□ -1.78
LMX1BO60663 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
LMX1BO60663 AC087359.1-201ENST00000508335 1740 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC3.93□□□□□ -1.78
LMX1BO60663 MTND4P26-201ENST00000415971 1359 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.93□□□□□ -1.78
LMX1BO60663 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 AC021146.4-201ENST00000309229 279 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC3.93□□□□□ -1.78
LMX1BO60663 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.93□□□□□ -1.78
LMX1BO60663 RNU6-619P-201ENST00000365146 108 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
LMX1BO60663 MAST4-207ENST00000407621 559 ntTSL 2 BASIC3.93□□□□□ -1.78
LMX1BO60663 SNORA11C-201ENST00000408532 129 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 RNU6-648P-201ENST00000410190 107 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 RN7SKP267-201ENST00000410381 285 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 VDAC1P9-201ENST00000412766 841 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AL161449.1-201ENST00000414531 1199 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 MTCO3P41-201ENST00000414801 328 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 GAPDHP49-201ENST00000421421 961 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AL049610.1-201ENST00000423374 372 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 BLOC1S2P1-201ENST00000428431 301 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 AC119800.1-201ENST00000429871 423 ntTSL 2 BASIC3.93□□□□□ -1.78
LMX1BO60663 USP9YP31-201ENST00000431405 881 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 CACYBPP1-201ENST00000438592 684 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.93□□□□□ -1.78
LMX1BO60663 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 NUTF2P7-201ENST00000453086 375 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC3.93□□□□□ -1.78
LMX1BO60663 RN7SL41P-201ENST00000476144 297 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AL024509.2-201ENST00000493462 493 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 RHOBTB3-204ENST00000504179 883 ntTSL 5 BASIC3.93□□□□□ -1.78
LMX1BO60663 AC010424.1-201ENST00000506336 297 ntBASIC3.93□□□□□ -1.78
LMX1BO60663 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
LMX1BO60663 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.93□□□□□ -1.78
LMX1BO60663 AC007016.1-201ENST00000512110 244 ntBASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms