Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC018797.3-201ENST00000513388 1241 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC117532.1-201ENST00000514638 323 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC022390.1-201ENST00000517854 434 ntTSL 3 BASIC5.17□□□□□ -1.58
HPS3Q969F9 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.17□□□□□ -1.58
HPS3Q969F9 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HPS3Q969F9 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
HPS3Q969F9 AC079075.1-201ENST00000559543 878 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC5.17□□□□□ -1.58
HPS3Q969F9 AC106745.1-201ENST00000566798 464 ntTSL 2 BASIC5.17□□□□□ -1.58
HPS3Q969F9 AC012435.1-202ENST00000568772 240 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.17□□□□□ -1.58
HPS3Q969F9 MIR3915-201ENST00000578518 97 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 MIR4737-201ENST00000583979 81 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AL512782.1-201ENST00000603093 364 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 RNF138P2-201ENST00000603490 592 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC245008.1-201ENST00000608123 476 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC008083.4-201ENST00000615076 444 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AL031667.3-201ENST00000620124 655 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 RNU6-156P-201ENST00000621869 107 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 AC008443.7-201ENST00000622195 246 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 PDCD6IPP1-202ENST00000622242 1064 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.17□□□□□ -1.58
HPS3Q969F9 AC231657.1-201ENST00000624313 397 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.17□□□□□ -1.58
HPS3Q969F9 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HPS3Q969F9 APAF1-209ENST00000550527 6581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HPS3Q969F9 MAPK10-263ENST00000641052 4307 ntBASIC5.17□□□□□ -1.58
HPS3Q969F9 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HPS3Q969F9 MTND5P28-201ENST00000438005 1594 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC5.16□□□□□ -1.58
HPS3Q969F9 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC5.16□□□□□ -1.58
HPS3Q969F9 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 AC021755.1-201ENST00000559747 1447 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.16□□□□□ -1.58
HPS3Q969F9 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC5.16□□□□□ -1.58
HPS3Q969F9 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HPS3Q969F9 RNU6-984P-201ENST00000363236 109 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HPS3Q969F9 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 ZNF603P-201ENST00000405613 487 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AL450338.1-201ENST00000407987 512 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.16□□□□□ -1.58
HPS3Q969F9 PIGPP2-201ENST00000411569 458 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AC004022.2-201ENST00000413824 193 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 RPS3AP9-201ENST00000417027 792 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AL360081.1-201ENST00000428299 555 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 MTND4P6-201ENST00000438297 472 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 RPL23AP16-201ENST00000441715 421 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 USP9YP10-201ENST00000454868 628 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AC087879.1-201ENST00000474343 374 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 CEACAMP10-202ENST00000495431 496 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AC108078.3-201ENST00000502633 489 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC5.16□□□□□ -1.58
HPS3Q969F9 HSPE1P23-201ENST00000509838 286 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 USP9YP5-201ENST00000511770 630 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AC239860.2-201ENST00000525886 270 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 CYCSP28-201ENST00000534284 321 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 SNHG1-217ENST00000541578 588 ntTSL 3 BASIC5.16□□□□□ -1.58
HPS3Q969F9 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.16□□□□□ -1.58
HPS3Q969F9 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.16□□□□□ -1.58
HPS3Q969F9 UBE2FP2-201ENST00000566646 462 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.16□□□□□ -1.58
HPS3Q969F9 MIR4480-201ENST00000582492 71 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 MIR4512-201ENST00000583257 77 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.16□□□□□ -1.58
HPS3Q969F9 AL022161.1-201ENST00000604390 213 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AL391358.1-201ENST00000605342 190 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 AC068722.2-201ENST00000618734 544 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HPS3Q969F9 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 AL079343.1-201ENST00000572358 1771 ntBASIC5.16□□□□□ -1.58
HPS3Q969F9 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HPS3Q969F9 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.16□□□□□ -1.58
HPS3Q969F9 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC5.16□□□□□ -1.58
HPS3Q969F9 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
HPS3Q969F9 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC5.15□□□□□ -1.58
HPS3Q969F9 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HPS3Q969F9 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.15□□□□□ -1.58
HPS3Q969F9 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HPS3Q969F9 OR51H2P-202ENST00000641424 3046 ntBASIC5.15□□□□□ -1.58
HPS3Q969F9 ARHGAP42P3-201ENST00000443989 2508 ntBASIC5.15□□□□□ -1.58
HPS3Q969F9 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
HPS3Q969F9 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HPS3Q969F9 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
HPS3Q969F9 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HPS3Q969F9 SNRPEP3-201ENST00000338402 276 ntBASIC5.15□□□□□ -1.59
HPS3Q969F9 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HPS3Q969F9 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.15□□□□□ -1.59
HPS3Q969F9 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HPS3Q969F9 RNU6-657P-201ENST00000383904 107 ntBASIC5.15□□□□□ -1.59
HPS3Q969F9 RPL23AP29-201ENST00000397284 453 ntBASIC5.15□□□□□ -1.59
HPS3Q969F9 AL023807.1-201ENST00000407932 359 ntBASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms