Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RNU1-30P-201ENST00000606575 163 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AP004289.2-201ENST00000444413 1457 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AC017002.4-201ENST00000604721 1525 ntBASIC3.83□□□□□ -1.8
CCDC112Q8NEF3 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AL139811.1-201ENST00000424779 2299 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 SRP72P2-201ENST00000344851 1979 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 ARF4-206ENST00000489843 1360 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 RNU6-673P-201ENST00000365084 104 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 U3.15-201ENST00000365398 212 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AL034403.1-201ENST00000399414 885 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 RN7SKP53-201ENST00000411337 315 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC069218.2-201ENST00000411665 344 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC093716.1-201ENST00000435923 377 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 CALM1P2-201ENST00000452941 448 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 RN7SL323P-201ENST00000494712 295 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC108078.3-201ENST00000502633 489 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 TRAV31-201ENST00000502780 342 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 UBE2NP1-201ENST00000545592 458 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 C2orf27A-204ENST00000623058 969 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC112200.1-201ENST00000625015 234 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 AC073476.4-201ENST00000628409 72 ntBASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC3.82□□□□□ -1.8
CCDC112Q8NEF3 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC123767.1-201ENST00000519537 1439 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC017071.1-201ENST00000564407 2204 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 TAS2R9-201ENST00000240691 1075 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 RNU6-697P-201ENST00000363348 107 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 U3.11-201ENST00000364476 212 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 RN7SKP222-201ENST00000410651 315 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC245054.1-201ENST00000420944 258 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC069157.1-201ENST00000421749 137 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AL139247.1-201ENST00000422768 325 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AL353093.1-201ENST00000441292 436 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 NOTCH2P1-201ENST00000443481 624 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 ACTR3P3-201ENST00000480448 893 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 HMGB1P21-201ENST00000502313 581 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 HMGN1P11-201ENST00000508668 303 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 RN7SKP157-201ENST00000516174 282 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 RNU6-352P-201ENST00000516908 107 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 TRMT10BP1-201ENST00000519377 943 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 MTND5P21-201ENST00000531961 522 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC087888.1-201ENST00000550884 1254 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 MIR5187-201ENST00000583479 76 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC024220.1-201ENST00000603675 484 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 SNORA51-201ENST00000606420 132 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC019131.2-201ENST00000609071 870 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC012531.5-201ENST00000611375 151 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AC039056.2-201ENST00000622261 511 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 AP003400.2-201ENST00000624036 666 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 CGA-204ENST00000627148 1010 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 U6.98-201ENST00000637157 84 ntBASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC112Q8NEF3 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 PTMAP5-201ENST00000393073 333 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 RNA5SP44-201ENST00000410446 133 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 REG1CP-203ENST00000434852 460 ntTSL 4 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 CFTRP1-201ENST00000456646 183 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 RPS20P21-201ENST00000466859 343 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 RPL23AP12-201ENST00000467573 473 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 HAUS1P1-201ENST00000505275 832 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AC245166.1-201ENST00000521012 253 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AL161713.1-201ENST00000555538 145 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 ZRANB2-AS2-213ENST00000591654 719 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AL391497.1-201ENST00000608671 547 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AC069209.1-201ENST00000619282 651 ntBASIC3.8□□□□□ -1.8
CCDC112Q8NEF3 AC145207.9-201ENST00000623802 325 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms