Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 AL359955.1-201ENST00000455242 3275 ntBASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
UBE3DQ7Z6J8 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC073343.1-201ENST00000328239 651 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 Y_RNA.231-201ENST00000364358 102 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SNORA75.4-201ENST00000391278 119 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RPL31P52-201ENST00000407532 367 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RNU6-1148P-201ENST00000410992 104 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 BEND7P1-201ENST00000422058 457 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC079807.1-201ENST00000429993 481 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 KRT8P51-201ENST00000438938 274 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC093156.1-201ENST00000440382 670 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RPL12P39-201ENST00000455456 496 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC090096.1-201ENST00000489168 390 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC139365.2-201ENST00000517972 253 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC011363.1-201ENST00000524198 458 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AP000648.1-201ENST00000529682 397 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ELOCP31-201ENST00000540463 467 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SCOCP1-201ENST00000554676 349 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC053481.3-201ENST00000577881 843 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SNRPGP17-201ENST00000603780 214 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.53□□□□□ -1.52
UBE3DQ7Z6J8 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AP004607.3-201ENST00000530354 3915 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 Y_RNA.259-201ENST00000364619 101 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 RNU6-43P-201ENST00000384302 107 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 RNA5SP91-201ENST00000390902 119 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AL356421.1-201ENST00000403255 413 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AL024474.1-201ENST00000404655 591 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 NPM1P40-201ENST00000412758 733 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AL590399.2-201ENST00000427536 309 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 CRIP1P1-201ENST00000427567 185 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AL683807.1-202ENST00000432272 382 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 RPL23AP30-201ENST00000432419 501 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 HNRNPA1P18-201ENST00000433537 927 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 ERLEC1P1-201ENST00000433806 578 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 SPRYD7P1-201ENST00000443861 570 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AC012512.1-201ENST00000446594 718 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 HLA-DPA3-207ENST00000454398 229 ntBASIC5.52□□□□□ -1.53
UBE3DQ7Z6J8 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 199 ms