Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 MIR3158-1-201ENST00000583596 81 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 MIR4444-2-201ENST00000584390 74 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPL7P50-201ENST00000600588 727 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL121932.1-201ENST00000605542 214 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP108-201ENST00000605921 117 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC107952.2-201ENST00000606048 486 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC091979.2-201ENST00000607514 214 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AL713922.2-201ENST00000619384 716 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 MIR6075-201ENST00000620782 95 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 AC005086.4-201ENST00000623065 213 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 NMD3P1-201ENST00000439704 1488 ntBASIC3.86□□□□□ -1.79
PDLIM3Q53GG5 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 A2MP1-204ENST00000566278 4130 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP191-201ENST00000362585 102 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 SNORD46.1-201ENST00000364139 104 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 RNU6-619P-201ENST00000365146 108 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL590762.2-201ENST00000395798 571 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL161909.1-201ENST00000397390 712 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL161449.1-201ENST00000414531 1199 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC00993-201ENST00000420453 540 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL732292.1-201ENST00000426692 226 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 RPS17P8-201ENST00000434525 335 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 ARL2BPP10-201ENST00000446487 531 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC005008.1-201ENST00000456151 612 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 VWA8P1-201ENST00000510889 176 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC008837.2-201ENST00000513076 418 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 FTH1P9-201ENST00000513251 355 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 RNA5SP392-201ENST00000516905 112 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 NRG1-IT3-201ENST00000519023 505 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AP001317.1-201ENST00000531194 960 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 CYCSP29-201ENST00000533731 318 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 FKBP1BP1-201ENST00000553366 325 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 CENPUP2-201ENST00000555897 1186 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC017100.2-201ENST00000584628 355 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC006130.2-201ENST00000586202 326 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC021755.4-201ENST00000616620 456 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC022509.4-201ENST00000621404 572 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AC124312.6-202ENST00000623624 418 ntBASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 OR6Y1-202ENST00000641282 3702 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
PDLIM3Q53GG5 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RNU1-94P-201ENST00000362627 173 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RNU1-20P-201ENST00000363314 162 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RNU6-839P-201ENST00000363347 108 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RNU4-92P-201ENST00000363783 136 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 RNU6-356P-201ENST00000384140 107 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 Y_RNA.465-201ENST00000384293 102 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 SNORA70E-201ENST00000384492 135 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 MIR195-201ENST00000385194 87 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 SNORD96B-201ENST00000386148 79 ntBASIC3.84□□□□□ -1.79
PDLIM3Q53GG5 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms