Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 HMGB3P30-201ENST00000457863 606 ntBASIC3.73□□□□□ -1.81
CDX1P47902 RPL5P24-201ENST00000463742 885 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC092757.1-201ENST00000467293 467 ntBASIC3.73□□□□□ -1.81
CDX1P47902 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CDX1P47902 SCARNA22-201ENST00000503991 125 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC114322.1-201ENST00000506771 926 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC008837.2-201ENST00000513076 418 ntBASIC3.73□□□□□ -1.81
CDX1P47902 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC3.73□□□□□ -1.81
CDX1P47902 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC3.73□□□□□ -1.81
CDX1P47902 MIR2114-201ENST00000516645 80 ntBASIC3.73□□□□□ -1.81
CDX1P47902 RN7SKP116-201ENST00000516902 319 ntBASIC3.73□□□□□ -1.81
CDX1P47902 MTND2P32-201ENST00000521584 1038 ntBASIC3.73□□□□□ -1.81
CDX1P47902 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC3.73□□□□□ -1.81
CDX1P47902 AC013509.1-201ENST00000524269 339 ntTSL 3 BASIC3.73□□□□□ -1.81
CDX1P47902 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC3.73□□□□□ -1.81
CDX1P47902 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC3.73□□□□□ -1.81
CDX1P47902 AP000619.3-201ENST00000535634 1127 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC087286.1-201ENST00000560712 568 ntTSL 3 BASIC3.73□□□□□ -1.81
CDX1P47902 AC107954.1-201ENST00000565906 727 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC3.73□□□□□ -1.81
CDX1P47902 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC3.73□□□□□ -1.81
CDX1P47902 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC3.73□□□□□ -1.81
CDX1P47902 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC3.73□□□□□ -1.81
CDX1P47902 RPL7P50-201ENST00000600588 727 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AP001521.1-201ENST00000609150 300 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AC008083.4-201ENST00000615076 444 ntBASIC3.73□□□□□ -1.81
CDX1P47902 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC3.73□□□□□ -1.81
CDX1P47902 AP001002.2-201ENST00000625137 386 ntBASIC3.73□□□□□ -1.81
CDX1P47902 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
CDX1P47902 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
CDX1P47902 LINC02471-203ENST00000641941 4752 ntBASIC3.73□□□□□ -1.81
CDX1P47902 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CDX1P47902 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC3.73□□□□□ -1.81
CDX1P47902 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
CDX1P47902 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.72□□□□□ -1.81
CDX1P47902 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.72□□□□□ -1.81
CDX1P47902 AC008725.1-201ENST00000605123 2263 ntBASIC3.72□□□□□ -1.81
CDX1P47902 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
CDX1P47902 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.72□□□□□ -1.81
CDX1P47902 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.72□□□□□ -1.81
CDX1P47902 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 RNA5SP443-201ENST00000363083 132 ntBASIC3.72□□□□□ -1.81
CDX1P47902 RNU6-560P-201ENST00000364007 108 ntBASIC3.72□□□□□ -1.81
CDX1P47902 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
CDX1P47902 Y_RNA.493-201ENST00000384422 102 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AL138878.1-201ENST00000405131 347 ntBASIC3.72□□□□□ -1.81
CDX1P47902 VN1R8P-201ENST00000407739 893 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AL590084.1-201ENST00000407885 387 ntBASIC3.72□□□□□ -1.81
CDX1P47902 JKAMPP1-201ENST00000413804 919 ntBASIC3.72□□□□□ -1.81
CDX1P47902 SSR1P2-201ENST00000415208 787 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AC004074.1-201ENST00000421810 1063 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 RPS6P12-201ENST00000432491 726 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC3.72□□□□□ -1.81
CDX1P47902 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 VN1R10P-201ENST00000447106 875 ntBASIC3.72□□□□□ -1.81
CDX1P47902 PTENP1-201ENST00000447117 1215 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC010733.1-201ENST00000451515 401 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AC010326.1-201ENST00000462726 602 ntBASIC3.72□□□□□ -1.81
CDX1P47902 PLGLA-201ENST00000465668 449 ntBASIC3.72□□□□□ -1.81
CDX1P47902 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.72□□□□□ -1.81
CDX1P47902 AC069444.1-201ENST00000489428 266 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AC093767.1-201ENST00000504523 156 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC3.72□□□□□ -1.81
CDX1P47902 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 MTCO3P44-201ENST00000510977 541 ntBASIC3.72□□□□□ -1.81
CDX1P47902 Vault.1-201ENST00000516474 102 ntBASIC3.72□□□□□ -1.81
CDX1P47902 RNU6-709P-201ENST00000517257 104 ntBASIC3.72□□□□□ -1.81
CDX1P47902 PTK2-220ENST00000520151 573 ntTSL 4 BASIC3.72□□□□□ -1.81
CDX1P47902 AC090151.1-201ENST00000520784 730 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC3.72□□□□□ -1.81
CDX1P47902 AC092851.1-201ENST00000535964 478 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC005832.3-201ENST00000537929 631 ntBASIC3.72□□□□□ -1.81
CDX1P47902 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.72□□□□□ -1.81
CDX1P47902 AC135001.1-201ENST00000544546 283 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC137768.1-201ENST00000549998 553 ntBASIC3.72□□□□□ -1.81
CDX1P47902 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.72□□□□□ -1.81
CDX1P47902 AL389895.1-201ENST00000554127 252 ntBASIC3.72□□□□□ -1.81
CDX1P47902 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
CDX1P47902 AL360157.1-201ENST00000565962 87 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 CYP4A43P-201ENST00000568156 121 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC3.72□□□□□ -1.81
CDX1P47902 MIR5699-201ENST00000578903 90 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AL355812.1-201ENST00000603215 216 ntBASIC3.72□□□□□ -1.81
CDX1P47902 AC103792.1-201ENST00000603591 919 ntBASIC3.72□□□□□ -1.81
CDX1P47902 IGHV3-29-201ENST00000604817 344 ntBASIC3.72□□□□□ -1.81
CDX1P47902 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms