Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC9P31274 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC9P31274 RNU5B-4P-201ENST00000363508 111 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 RNA5SP50-201ENST00000363731 107 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 RNU6-185P-201ENST00000384421 107 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 MIR513A2-201ENST00000385249 127 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.86□□□□□ -1.63
HOXC9P31274 AC009237.5-201ENST00000414271 501 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 MTND4P11-201ENST00000417020 1058 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 OR5AW1P-201ENST00000426334 1006 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC9P31274 HIGD1AP12-201ENST00000427832 281 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXC9P31274 RPS7P2-201ENST00000435134 607 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC4.86□□□□□ -1.63
HOXC9P31274 TMX2P1-201ENST00000436507 708 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXC9P31274 NPM1P39-201ENST00000449818 867 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 snoU13.24-201ENST00000458998 104 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 RNU7-27P-201ENST00000459281 62 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 RPL7P48-201ENST00000461513 746 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 TRBV12-2-201ENST00000489763 344 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AP000563.1-201ENST00000490865 758 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 ARL4AP1-201ENST00000503220 705 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.86□□□□□ -1.63
HOXC9P31274 HMGB3P13-201ENST00000511263 607 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 NACA-211ENST00000548563 827 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 AC037471.2-201ENST00000564941 598 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AC010735.1-201ENST00000567305 1026 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 MIR4760-201ENST00000585040 80 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC4.86□□□□□ -1.63
HOXC9P31274 MRPS35P3-201ENST00000603189 709 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AC011374.2-201ENST00000607135 526 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AC034229.4-201ENST00000607861 441 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 AL355365.1-201ENST00000616480 294 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC9P31274 MTCO1P18-201ENST00000455518 1419 ntBASIC4.86□□□□□ -1.63
HOXC9P31274 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
HOXC9P31274 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC097504.1-201ENST00000515103 2415 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXC9P31274 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
HOXC9P31274 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
HOXC9P31274 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXC9P31274 HMGB3P18-201ENST00000406327 590 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC051618.1-201ENST00000414295 207 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.85□□□□□ -1.63
HOXC9P31274 PTP4A1P7-201ENST00000423476 514 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC093422.3-201ENST00000428506 305 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC092685.1-201ENST00000447960 1243 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC008427.1-201ENST00000503102 655 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.85□□□□□ -1.63
HOXC9P31274 SUMO2P20-201ENST00000520803 283 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.85□□□□□ -1.63
HOXC9P31274 MIR4789-201ENST00000577469 82 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC022884.3-201ENST00000579571 248 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 MIR548Y-201ENST00000582739 110 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC006116.10-201ENST00000591836 581 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC091057.3-201ENST00000602684 733 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AL137072.1-201ENST00000603444 466 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXC9P31274 AL050303.3-201ENST00000613704 284 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 AC017007.4-201ENST00000503353 1352 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
HOXC9P31274 AC010266.2-201ENST00000564741 3255 ntBASIC4.85□□□□□ -1.63
HOXC9P31274 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.85□□□□□ -1.63
HOXC9P31274 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.84□□□□□ -1.63
HOXC9P31274 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC4.84□□□□□ -1.63
HOXC9P31274 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 AC096751.1-201ENST00000515178 2202 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 SCN1A-220ENST00000641603 12506 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 IPCEF1-210ENST00000519344 1621 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.63
HOXC9P31274 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 AC106754.1-201ENST00000562632 1513 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
HOXC9P31274 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HOXC9P31274 HLFP1-201ENST00000402375 499 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC9P31274 EIF4EP1-201ENST00000422311 642 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AL391219.1-201ENST00000422570 483 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 ETF1P3-201ENST00000430422 1160 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 MTND2P2-201ENST00000434633 945 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC022431.1-201ENST00000450941 438 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 RPL26P28-201ENST00000451325 435 ntBASIC4.84□□□□□ -1.63
HOXC9P31274 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC9P31274 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.84□□□□□ -1.63
HOXC9P31274 RPL21P6-201ENST00000479171 504 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms