Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC114546.3-201ENST00000623582 1734 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 RNU6-462P-201ENST00000362659 105 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 Y_RNA.97-201ENST00000363094 102 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RNU6-984P-201ENST00000363236 109 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RNU6-777P-201ENST00000364265 104 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 RNU6-444P-201ENST00000383988 108 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 HMGB1P11-201ENST00000413899 637 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 COX6B1P1-201ENST00000415962 213 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL121878.1-201ENST00000418638 859 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXD3P31249 DDX39BP1-205ENST00000422507 192 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RPS27AP7-201ENST00000422792 455 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD3P31249 RPL12P34-201ENST00000424532 479 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 SDCBPP2-201ENST00000424643 885 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RPS27AP6-201ENST00000427962 448 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXD3P31249 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD3P31249 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 OR2B8P-201ENST00000432841 938 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 LSM1P1-201ENST00000438629 273 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC239367.2-201ENST00000447309 705 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RPL39P6-201ENST00000448289 150 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 NANOGNBP1-201ENST00000448444 480 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 RPS29P33-201ENST00000456717 146 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 MEMO1P3-201ENST00000459811 302 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC092324.1-201ENST00000468671 324 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AP000797.1-201ENST00000478870 387 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC008897.1-201ENST00000494006 347 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RN7SL591P-201ENST00000496150 292 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC097173.1-201ENST00000505862 819 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC116347.2-201ENST00000514912 523 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 RN7SKP96-201ENST00000516948 297 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 SOD1P3-201ENST00000518682 454 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC025881.1-201ENST00000518851 512 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD3P31249 CFL2-206ENST00000556161 546 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXD3P31249 NOP10-202ENST00000557912 436 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC3.96□□□□□ -1.78
HOXD3P31249 MIR4801-201ENST00000582704 82 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AC011487.3-201ENST00000593607 453 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 SEPT7P9-203ENST00000604116 343 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL022394.1-201ENST00000606979 292 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL022238.2-202ENST00000607915 658 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC131238.1-201ENST00000617135 328 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL731566.2-201ENST00000618971 317 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 C8orf59-213ENST00000619594 859 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 AC087385.3-201ENST00000620477 187 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.96□□□□□ -1.78
HOXD3P31249 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 ANO3-202ENST00000525139 3257 ntAPPRIS ALT1 TSL 5 BASIC3.96□□□□□ -1.78
HOXD3P31249 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
HOXD3P31249 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXD3P31249 THAP12P4-201ENST00000528321 2266 ntBASIC3.96□□□□□ -1.78
HOXD3P31249 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXD3P31249 CYP1D1P-201ENST00000416662 1433 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 AC012020.1-201ENST00000624541 1728 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC3.95□□□□□ -1.78
HOXD3P31249 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXD3P31249 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 AP001029.2-203ENST00000589795 4910 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 AC027290.2-201ENST00000623210 18662 ntBASIC3.95□□□□□ -1.78
HOXD3P31249 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXD3P31249 AC012618.3-205ENST00000637896 1496 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms