Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 MCCC1-210ENST00000492597 2774 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
MSX1P28360 TLR10-207ENST00000613579 3801 ntAPPRIS P1 TSL 3 BASIC6.02□□□□□ -1.45
MSX1P28360 CCDC158-201ENST00000388914 3663 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSX1P28360 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX1P28360 HSPA8P14-201ENST00000552265 1805 ntBASIC6.02□□□□□ -1.45
MSX1P28360 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 MAP3K7CL-209ENST00000399947 2003 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 LPAL2-203ENST00000454031 2498 ntBASIC6.01□□□□□ -1.45
MSX1P28360 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 PPIAP24-201ENST00000328558 471 ntBASIC6.01□□□□□ -1.45
MSX1P28360 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 Y_RNA.396-201ENST00000383949 103 ntBASIC6.01□□□□□ -1.45
MSX1P28360 MIR548M-201ENST00000408260 86 ntBASIC6.01□□□□□ -1.45
MSX1P28360 RNU6-101P-201ENST00000410323 104 ntBASIC6.01□□□□□ -1.45
MSX1P28360 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 AL160275.1-201ENST00000423632 476 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 AL161722.2-201ENST00000434731 981 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 AC002553.2-201ENST00000453217 340 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC008571.1-201ENST00000467232 300 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 SNORA58-201ENST00000505219 137 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC116337.1-201ENST00000509680 687 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC018797.3-201ENST00000513388 1241 ntBASIC6.01□□□□□ -1.45
MSX1P28360 Y_RNA.708-201ENST00000516950 96 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 PRH1-204ENST00000539853 837 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 OLR1-209ENST00000543993 822 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 AC124068.1-201ENST00000563131 678 ntBASIC6.01□□□□□ -1.45
MSX1P28360 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC6.01□□□□□ -1.45
MSX1P28360 AL355810.1-201ENST00000614629 552 ntBASIC6.01□□□□□ -1.45
MSX1P28360 MIR6128-201ENST00000615528 109 ntBASIC6.01□□□□□ -1.45
MSX1P28360 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 U1.41-201ENST00000617626 165 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC141273.2-201ENST00000618989 130 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC103705.1-201ENST00000619013 241 ntBASIC6.01□□□□□ -1.45
MSX1P28360 AC000123.2-201ENST00000623124 461 ntBASIC6.01□□□□□ -1.45
MSX1P28360 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC6.01□□□□□ -1.45
MSX1P28360 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 ADTRP-203ENST00000414691 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC6.01□□□□□ -1.45
MSX1P28360 AC009120.2-204ENST00000621548 2032 ntBASIC6.01□□□□□ -1.45
MSX1P28360 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
MSX1P28360 DOCK9-208ENST00000448493 7887 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
MSX1P28360 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 OR55B1P-203ENST00000641518 2602 ntBASIC6□□□□□ -1.45
MSX1P28360 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
MSX1P28360 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC6□□□□□ -1.45
MSX1P28360 YPEL5-201ENST00000261353 2182 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 AL136531.3-201ENST00000624378 3658 ntBASIC6□□□□□ -1.45
MSX1P28360 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC6□□□□□ -1.45
MSX1P28360 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
MSX1P28360 RNU6-511P-201ENST00000363496 107 ntBASIC6□□□□□ -1.45
MSX1P28360 RNU6-266P-201ENST00000364225 107 ntBASIC6□□□□□ -1.45
MSX1P28360 RN7SKP15-201ENST00000364742 309 ntBASIC6□□□□□ -1.45
MSX1P28360 Y_RNA.288-201ENST00000364854 92 ntBASIC6□□□□□ -1.45
MSX1P28360 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
MSX1P28360 Y_RNA.428-201ENST00000384078 102 ntBASIC6□□□□□ -1.45
MSX1P28360 MIR19A-201ENST00000384878 82 ntBASIC6□□□□□ -1.45
MSX1P28360 AC007562.1-201ENST00000421819 517 ntBASIC6□□□□□ -1.45
MSX1P28360 CYCSP52-201ENST00000422857 310 ntBASIC6□□□□□ -1.45
MSX1P28360 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC6□□□□□ -1.45
MSX1P28360 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 PPIAP13-201ENST00000434706 478 ntBASIC6□□□□□ -1.45
MSX1P28360 AL645939.3-201ENST00000435408 225 ntBASIC6□□□□□ -1.45
MSX1P28360 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC6□□□□□ -1.45
MSX1P28360 CEACAMP9-201ENST00000442990 513 ntBASIC6□□□□□ -1.45
MSX1P28360 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6□□□□□ -1.45
MSX1P28360 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC6□□□□□ -1.45
MSX1P28360 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 GAS5-223ENST00000452197 483 ntTSL 3 BASIC6□□□□□ -1.45
MSX1P28360 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC6□□□□□ -1.45
MSX1P28360 AC023194.2-201ENST00000465398 406 ntBASIC6□□□□□ -1.45
MSX1P28360 AC011476.1-201ENST00000466725 307 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 87.6 ms