Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AL162388.1-201ENST00000450912 352 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC233982.1-201ENST00000451247 436 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 NANOGP10-201ENST00000453325 895 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC096554.1-201ENST00000458182 529 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 FAM133DP-201ENST00000464802 691 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RPS20P21-201ENST00000466859 343 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 C1GALT1C1L-201ENST00000475092 1172 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC015724.1-201ENST00000478577 156 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC139783.2-201ENST00000504847 1145 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 NDUFB4P12-201ENST00000513465 390 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 HMGN1P15-201ENST00000513870 295 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 HNRNPKP5-201ENST00000515300 253 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC124293.1-201ENST00000530034 493 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC074029.1-201ENST00000552531 1044 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC006130.2-201ENST00000586202 326 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC005344.1-201ENST00000613391 459 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC110491.2-201ENST00000624061 646 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AC068254.2-201ENST00000623938 3577 ntBASIC3.87□□□□□ -1.79
LHX3Q9UBR4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC3.87□□□□□ -1.79
LHX3Q9UBR4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 SPANXN3-201ENST00000370503 590 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 RNU6-468P-201ENST00000384003 109 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 U8.11-201ENST00000384699 133 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 U8.12-201ENST00000384701 133 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 RNU6-77P-201ENST00000410554 91 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 RN7SKP159-201ENST00000410657 292 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC004987.3-201ENST00000413879 771 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL139247.1-201ENST00000422768 325 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 SNORA71B-202ENST00000439232 272 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL929288.2-201ENST00000446368 407 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 CLEC4E-202ENST00000446457 701 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 U8.18-201ENST00000459285 133 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 RPS17P11-201ENST00000474297 293 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC015908.1-201ENST00000478739 476 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 MTND4LP31-201ENST00000514859 294 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 PRELID3BP4-201ENST00000515476 571 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 MYL12AP1-201ENST00000518490 515 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AP003355.1-201ENST00000518956 587 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC007991.1-201ENST00000522680 631 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 DEFB109D-201ENST00000529497 240 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 PTP4A1P6-201ENST00000531034 478 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 MIR4789-201ENST00000577469 82 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL139395.1-201ENST00000603662 160 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC115621.1-201ENST00000604653 858 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 SNORA62.6-201ENST00000606322 83 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL359535.1-201ENST00000612100 1087 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC008759.3-201ENST00000613300 508 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL161637.1-201ENST00000622380 412 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AL109659.3-201ENST00000624985 950 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
LHX3Q9UBR4 AP004289.2-201ENST00000444413 1457 ntBASIC3.86□□□□□ -1.79
LHX3Q9UBR4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
LHX3Q9UBR4 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms