Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 HMGB3P31-201ENST00000413333 595 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 RPS12P23-201ENST00000419579 400 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 HMGB3P5-201ENST00000428894 612 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC3.63□□□□□ -1.83
PKNOX1P55347 SETD6P1-201ENST00000444575 317 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC3.63□□□□□ -1.83
PKNOX1P55347 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC3.63□□□□□ -1.83
PKNOX1P55347 CEACAMP4-201ENST00000457676 421 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 RNU7-170P-201ENST00000459303 61 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 RPL9P32-201ENST00000464118 620 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 TRBV8-2-201ENST00000475637 270 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 COL6A4P2-205ENST00000509855 506 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 FTH1P21-201ENST00000512179 511 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC3.63□□□□□ -1.83
PKNOX1P55347 AC008494.2-201ENST00000514544 370 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 HMGB1P23-201ENST00000518743 568 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.63□□□□□ -1.83
PKNOX1P55347 OR8K2P-201ENST00000524645 927 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 AC025300.1-201ENST00000526616 384 ntTSL 3 BASIC3.63□□□□□ -1.83
PKNOX1P55347 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC3.63□□□□□ -1.83
PKNOX1P55347 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC3.63□□□□□ -1.83
PKNOX1P55347 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC3.63□□□□□ -1.83
PKNOX1P55347 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC3.63□□□□□ -1.83
PKNOX1P55347 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC3.63□□□□□ -1.83
PKNOX1P55347 AC012531.5-201ENST00000611375 151 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 AC008121.2-201ENST00000614647 523 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 AC073592.7-201ENST00000623659 507 ntBASIC3.63□□□□□ -1.83
PKNOX1P55347 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC3.63□□□□□ -1.83
PKNOX1P55347 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PKNOX1P55347 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
PKNOX1P55347 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
PKNOX1P55347 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 TANK-205ENST00000405852 2155 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 CEP170-202ENST00000366542 6828 ntAPPRIS P1 TSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 RPL9-201ENST00000295955 750 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 SNORA3.3-201ENST00000408712 125 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 RNA5SP317-201ENST00000410176 116 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 SNORA57.3-201ENST00000411095 141 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 RNA5SP311-201ENST00000411290 116 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 USP9YP19-201ENST00000412165 485 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 HMGB3P20-201ENST00000417997 600 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC3.62□□□□□ -1.83
PKNOX1P55347 VN1R42P-201ENST00000424651 344 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 EIF2S2P3-201ENST00000428356 999 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC114755.5-201ENST00000447760 831 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL162151.2-201ENST00000448875 158 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 MRPS31P2-201ENST00000451581 518 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AL136097.1-201ENST00000456945 913 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC096992.1-201ENST00000459808 709 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 ANK3-207ENST00000460468 677 ntTSL 3 BASIC3.62□□□□□ -1.83
PKNOX1P55347 RPL7L1P8-201ENST00000469911 741 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 RPS3AP50-201ENST00000487064 803 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 TRAV31-201ENST00000502780 342 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.62□□□□□ -1.83
PKNOX1P55347 RN7SKP122-201ENST00000515923 296 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 RNA5SP315-201ENST00000516340 116 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 RNA5SP312-201ENST00000517068 116 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC008562.1-201ENST00000521763 330 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AP000919.1-202ENST00000581139 1264 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC012254.4-201ENST00000588843 273 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL392112.1-201ENST00000605115 829 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AP003117.2-201ENST00000606010 545 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AL023583.1-201ENST00000607518 1143 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 STARD13-AS-235ENST00000609335 855 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC105429.2-201ENST00000610567 517 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 AC016717.3-201ENST00000624730 554 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.62□□□□□ -1.83
PKNOX1P55347 MIR6830-201ENST00000636015 70 ntBASIC3.62□□□□□ -1.83
PKNOX1P55347 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 AC134980.1-211ENST00000638243 1094 ntTSL 2 BASIC3.62□□□□□ -1.83
PKNOX1P55347 ZNF479-201ENST00000319636 1811 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
PKNOX1P55347 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.62□□□□□ -1.83
PKNOX1P55347 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PKNOX1P55347 AL353746.1-201ENST00000566293 6881 ntBASIC3.61□□□□□ -1.83
PKNOX1P55347 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.61□□□□□ -1.83
PKNOX1P55347 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
PKNOX1P55347 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC3.61□□□□□ -1.83
PKNOX1P55347 RNA5SP391-201ENST00000363456 119 ntBASIC3.61□□□□□ -1.83
PKNOX1P55347 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
PKNOX1P55347 METTL5-204ENST00000409340 472 ntTSL 5 BASIC3.61□□□□□ -1.83
PKNOX1P55347 RNU2-65P-201ENST00000410162 185 ntBASIC3.61□□□□□ -1.83
PKNOX1P55347 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.61□□□□□ -1.83
PKNOX1P55347 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC3.61□□□□□ -1.83
PKNOX1P55347 RPL31P45-201ENST00000419532 356 ntBASIC3.61□□□□□ -1.83
PKNOX1P55347 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC3.61□□□□□ -1.83
PKNOX1P55347 AC092832.1-201ENST00000422934 400 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms