Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 SNORD65C-201ENST00000390962 71 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC004987.3-201ENST00000413879 771 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC246680.2-201ENST00000422106 389 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC008065.1-201ENST00000428525 348 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 HMGB1P37-201ENST00000439613 609 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC002542.1-201ENST00000440683 193 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC004865.1-201ENST00000442276 1003 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 ZNF736P11Y-201ENST00000442535 1213 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 ZNF736P12Y-201ENST00000443152 1243 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL929288.2-201ENST00000446368 407 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC104306.1-201ENST00000449702 371 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 RPL23AP15-201ENST00000450202 459 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 ZNF736P4Y-201ENST00000454995 1243 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL133162.1-201ENST00000463228 453 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC015724.1-201ENST00000478577 156 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 UBE2CP3-201ENST00000502715 450 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC017037.1-201ENST00000508460 471 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 HMGN1P11-201ENST00000508668 303 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 RNU6-513P-201ENST00000516104 104 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 SCARNA14-201ENST00000516903 136 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 DUXAP2-201ENST00000519198 589 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 DEFB109D-201ENST00000529497 240 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC124293.1-201ENST00000530034 493 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC074029.1-201ENST00000552531 1044 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 MIR5187-201ENST00000583479 76 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL022097.1-201ENST00000602500 806 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC019176.2-201ENST00000611579 315 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 BNIP3P41-202ENST00000616656 861 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 AC073530.2-201ENST00000623987 261 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 AL109659.3-201ENST00000624985 950 ntBASIC3.95□□□□□ -1.78
TNFRSF4P43489 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.95□□□□□ -1.78
TNFRSF4P43489 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
TNFRSF4P43489 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 USP44-208ENST00000552440 1818 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 SNORD46.1-201ENST00000364139 104 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 OR5K3-201ENST00000383695 966 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 RNU6-272P-201ENST00000411028 104 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC091286.1-201ENST00000431233 461 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC005002.1-201ENST00000447458 540 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 RPL5P30-201ENST00000465511 891 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 RPS26P28-201ENST00000470806 348 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 RPS17P11-201ENST00000474297 293 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC092902.1-201ENST00000486999 259 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 HMGN1P15-201ENST00000513870 295 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 PRELID3BP4-201ENST00000515476 571 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 IGLV3-26-201ENST00000520756 302 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 RGS4-207ENST00000527809 817 ntTSL 4 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC006518.1-201ENST00000541449 943 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 CYP4A43P-201ENST00000568156 121 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 MIR4789-201ENST00000577469 82 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC009704.1-201ENST00000583702 331 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC010680.3-201ENST00000604215 520 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC069200.1-201ENST00000609511 323 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC008759.3-201ENST00000613300 508 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 AC009093.8-201ENST00000641769 292 ntBASIC3.94□□□□□ -1.78
TNFRSF4P43489 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC3.94□□□□□ -1.78
TNFRSF4P43489 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
TNFRSF4P43489 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 150.9 ms