Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
HMGA1P17096 OR5AQ1P-203ENST00000641818 1529 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HMGA1P17096 SNORA54-201ENST00000384281 123 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC3.31□□□□□ -1.88
HMGA1P17096 CST9LP2-201ENST00000437612 320 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 PPIAP17-201ENST00000438507 471 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.31□□□□□ -1.88
HMGA1P17096 CYCSP20-201ENST00000473154 315 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.31□□□□□ -1.88
HMGA1P17096 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.31□□□□□ -1.88
HMGA1P17096 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGA1P17096 SCARNA13-201ENST00000516672 275 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC3.31□□□□□ -1.88
HMGA1P17096 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.31□□□□□ -1.88
HMGA1P17096 MIR4425-201ENST00000580572 84 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC3.31□□□□□ -1.88
HMGA1P17096 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.31□□□□□ -1.88
HMGA1P17096 AF117829.1-206ENST00000621883 3802 ntBASIC3.31□□□□□ -1.88
HMGA1P17096 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HMGA1P17096 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HMGA1P17096 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
HMGA1P17096 AC093719.1-202ENST00000392735 373 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC3.3□□□□□ -1.88
HMGA1P17096 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC3.3□□□□□ -1.88
HMGA1P17096 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HMGA1P17096 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC3.3□□□□□ -1.88
HMGA1P17096 HMGB3P11-201ENST00000440127 604 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 IGKV1OR-3-201ENST00000446944 348 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.3□□□□□ -1.88
HMGA1P17096 AC002553.2-201ENST00000453217 340 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 AP001486.1-201ENST00000463339 476 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC3.3□□□□□ -1.88
HMGA1P17096 Vault.1-201ENST00000516474 102 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 CR383656.14-201ENST00000551951 406 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 EIF4BP1-201ENST00000554881 351 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 AL121594.4-201ENST00000556211 1196 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.3□□□□□ -1.88
HMGA1P17096 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC3.3□□□□□ -1.88
HMGA1P17096 AL451007.1-201ENST00000595491 289 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 PRELID3BP8-201ENST00000604148 295 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.3□□□□□ -1.88
HMGA1P17096 ATP5A1P2-202ENST00000616464 443 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 MIR622-201ENST00000638396 96 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 AL356489.2-201ENST00000566968 3528 ntBASIC3.3□□□□□ -1.88
HMGA1P17096 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.29□□□□□ -1.88
HMGA1P17096 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HMGA1P17096 OR5BR1P-201ENST00000524992 1330 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 OR1S2-201ENST00000302592 978 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 RNU1-87P-201ENST00000363727 170 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGA1P17096 SNORA44-201ENST00000384584 132 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AL122016.1-201ENST00000403365 367 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AL138885.1-201ENST00000405921 675 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AL355306.2-209ENST00000437803 357 ntTSL 2 BASIC3.29□□□□□ -1.88
HMGA1P17096 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGA1P17096 Z99127.3-201ENST00000448158 395 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 HMGB1P5-202ENST00000451497 985 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGA1P17096 TMED11P-201ENST00000479478 690 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AL049873.1-201ENST00000480540 376 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AC080014.1-201ENST00000496877 1201 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.29□□□□□ -1.88
HMGA1P17096 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGA1P17096 AC005242.1-201ENST00000585658 438 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 ZNF807-201ENST00000328088 1707 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC3.29□□□□□ -1.88
HMGA1P17096 AC118273.1-201ENST00000525324 3006 ntBASIC3.29□□□□□ -1.88
HMGA1P17096 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGA1P17096 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HMGA1P17096 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HMGA1P17096 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.29□□□□□ -1.88
HMGA1P17096 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC3.28□□□□□ -1.88
HMGA1P17096 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HMGA1P17096 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
HMGA1P17096 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGA1P17096 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGA1P17096 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGA1P17096 RN7SKP220-201ENST00000410611 288 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 RNU6-55P-201ENST00000411092 107 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 RNU6-954P-201ENST00000411355 107 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGA1P17096 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HMGA1P17096 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGA1P17096 AC023034.1-202ENST00000558153 684 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGA1P17096 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.28□□□□□ -1.88
HMGA1P17096 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.28□□□□□ -1.88
HMGA1P17096 AL137843.1-201ENST00000605078 385 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 U7.8-201ENST00000619968 63 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 AC099506.2-201ENST00000623074 221 ntBASIC3.28□□□□□ -1.88
HMGA1P17096 SLC41A2-201ENST00000258538 4449 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HMGA1P17096 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.28□□□□□ -1.89
HMGA1P17096 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.89
HMGA1P17096 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
HMGA1P17096 HSPA8P17-201ENST00000427029 1382 ntBASIC3.27□□□□□ -1.89
HMGA1P17096 MTND4P10-201ENST00000446199 1363 ntBASIC3.27□□□□□ -1.89
HMGA1P17096 LMNTD1-204ENST00000458174 1677 ntAPPRIS ALT2 TSL 2 BASIC3.27□□□□□ -1.89
HMGA1P17096 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms