Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 MIR4505-201ENST00000582238 73 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 ZNF573-209ENST00000585724 453 ntTSL 5 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AL136363.1-201ENST00000605349 337 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AC068722.2-201ENST00000618734 544 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 ZFAT-AS1_1.1-201ENST00000620907 79 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 VPS8-228ENST00000628962 207 ntTSL 5 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AC138907.8-201ENST00000623981 2256 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AC107081.3-201ENST00000612715 2034 ntBASIC5.35□□□□□ -1.55
PTCHD1Q96NR3 AL138820.1-201ENST00000617901 5305 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 NMD3P1-201ENST00000439704 1488 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 OR52B1P-201ENST00000316506 909 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 MIR323A-201ENST00000362199 86 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RNU6-441P-201ENST00000384545 106 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 Y_RNA.548-201ENST00000384656 105 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 FGFR1OP2P1-201ENST00000395943 500 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL031679.1-201ENST00000400616 525 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RNA5SP118-201ENST00000410385 109 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL133384.1-201ENST00000412744 351 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 FABP7P1-201ENST00000424004 391 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC007677.1-201ENST00000445757 515 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC104688.1-201ENST00000447158 419 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RPS20P20-201ENST00000460498 340 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RPL7P15-201ENST00000461190 712 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 RN7SL273P-201ENST00000481561 299 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL049872.1-201ENST00000556323 322 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC090515.3-201ENST00000560431 315 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC099489.2-201ENST00000574976 260 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 NANOGP3-201ENST00000605855 286 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AL355816.1-201ENST00000607951 118 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 AC135507.2-201ENST00000612443 309 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 YWHAEP7-203ENST00000622054 312 ntBASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
PTCHD1Q96NR3 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.56
PTCHD1Q96NR3 AL049780.3-201ENST00000624612 1583 ntBASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 MIR133A2-201ENST00000347538 102 ntBASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 RNU6-249P-201ENST00000363016 102 ntBASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.33□□□□□ -1.56
PTCHD1Q96NR3 RNU1-39P-201ENST00000383897 165 ntBASIC5.33□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 142.2 ms