Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC048346.1-201ENST00000510247 144 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 MTCO3P44-201ENST00000510977 541 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 RNU5A-7P-201ENST00000515979 116 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 RN7SKP244-201ENST00000516513 307 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AP004371.1-201ENST00000525240 214 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 OR5M7P-201ENST00000526140 972 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC244505.7-201ENST00000599675 272 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 DPRXP5-201ENST00000604662 539 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 AC120053.1-201ENST00000607706 736 ntBASIC4.23□□□□□ -1.73
VMP1Q96GC9 C8orf89-201ENST00000613105 495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VMP1Q96GC9 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
VMP1Q96GC9 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
VMP1Q96GC9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC4.23□□□□□ -1.73
VMP1Q96GC9 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
VMP1Q96GC9 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL627171.1-201ENST00000618845 1308 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 FER-202ENST00000438717 1531 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC067945.1-201ENST00000342609 618 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 RNU6-115P-201ENST00000364310 107 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 PGAP1-203ENST00000409188 1246 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 Y_RNA.625-201ENST00000411256 107 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC019070.1-201ENST00000415008 1024 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 SFR1P2-201ENST00000421841 730 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 RPEP3-201ENST00000425462 676 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 RPL21P91-201ENST00000429231 479 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL356276.2-201ENST00000435919 558 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC000041.1-201ENST00000439655 175 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC104073.1-201ENST00000451988 151 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 RPL23AP55-201ENST00000498163 452 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC025674.1-201ENST00000507074 324 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC116616.1-201ENST00000508815 366 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC023442.2-201ENST00000526455 270 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AP000827.1-201ENST00000527814 258 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AGGF1P6-201ENST00000569213 976 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 MIR3690-201ENST00000580266 75 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL669831.4-202ENST00000590817 238 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC097467.3-204ENST00000595229 827 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC115286.1-201ENST00000604298 434 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 AL158211.2-201ENST00000607282 395 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 TEX41-256ENST00000626411 368 ntTSL 5 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC016588.2-201ENST00000632484 3021 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC116096.1-201ENST00000566804 2314 ntBASIC4.22□□□□□ -1.73
VMP1Q96GC9 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
VMP1Q96GC9 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
VMP1Q96GC9 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
VMP1Q96GC9 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 RNU6-629P-201ENST00000384061 103 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 RNU6-1181P-201ENST00000384191 106 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 RNU6-339P-201ENST00000384310 107 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 FCF1P5-201ENST00000406490 482 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL583834.1-201ENST00000406943 343 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 AC016397.1-201ENST00000412463 242 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 TOMM22P1-201ENST00000418578 312 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 HSFY1P1-201ENST00000423928 1178 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 VDAC1P6-201ENST00000430062 855 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 VDAC1P3-201ENST00000434069 851 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
VMP1Q96GC9 ELOCP8-201ENST00000439309 332 ntBASIC4.21□□□□□ -1.74
VMP1Q96GC9 ELOCP15-201ENST00000442090 332 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms