Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RNU6-50P-201ENST00000362356 103 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 RN7SKP104-201ENST00000362605 328 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 SNORD51-201ENST00000384320 80 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 SNORD3H-201ENST00000384486 214 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 MIR323B-201ENST00000385269 82 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 DPPA2P3-201ENST00000411853 655 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC068533.2-201ENST00000411872 306 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 RAC1P3-201ENST00000416129 580 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC062016.2-201ENST00000420950 676 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC019178.2-201ENST00000423595 505 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.68□□□□□ -1.5
HMGB1P09429 AC079780.1-201ENST00000428259 207 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC004854.1-201ENST00000440356 349 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AURKAPS2-201ENST00000454983 333 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 RPS5P7-201ENST00000456664 608 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 snoU109.4-201ENST00000458953 143 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC074386.1-201ENST00000476560 767 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 MTCO3P35-201ENST00000485582 781 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC093270.2-201ENST00000486157 792 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC5.68□□□□□ -1.5
HMGB1P09429 AC104971.1-201ENST00000495117 578 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC068305.1-201ENST00000497406 726 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 RN7SKP276-201ENST00000516242 268 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 RNU1-6P-201ENST00000516290 144 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC5.68□□□□□ -1.5
HMGB1P09429 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.68□□□□□ -1.5
HMGB1P09429 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC5.68□□□□□ -1.5
HMGB1P09429 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
HMGB1P09429 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.68□□□□□ -1.5
HMGB1P09429 EDDM3DP-201ENST00000554692 434 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.68□□□□□ -1.5
HMGB1P09429 MIR5699-201ENST00000578903 90 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 AC022726.1-201ENST00000587475 207 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.68□□□□□ -1.5
HMGB1P09429 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC5.68□□□□□ -1.5
HMGB1P09429 OSBPL9P4-201ENST00000371707 1800 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
HMGB1P09429 AC097504.1-201ENST00000515103 2415 ntBASIC5.68□□□□□ -1.5
HMGB1P09429 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.68□□□□□ -1.5
HMGB1P09429 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
HMGB1P09429 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
HMGB1P09429 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC126323.6-202ENST00000568092 3511 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HMGB1P09429 NCLP2-201ENST00000416078 1462 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HMGB1P09429 MOB4-205ENST00000409916 829 ntTSL 3 BASIC5.67□□□□□ -1.5
HMGB1P09429 AL356320.2-201ENST00000417263 507 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 AL645608.4-201ENST00000423619 154 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 OR5H14-201ENST00000437310 1080 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 LINC01986-201ENST00000440867 590 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 MTCO2P25-201ENST00000447065 681 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HMGB1P09429 DUXAP8-207ENST00000456786 622 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 RPL7P1-201ENST00000468161 747 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 TMEM251P1-201ENST00000503717 318 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.67□□□□□ -1.5
HMGB1P09429 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
HMGB1P09429 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.67□□□□□ -1.5
HMGB1P09429 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 AP005380.1-201ENST00000584896 547 ntTSL 4 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 AC012531.5-201ENST00000611375 151 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 DUXAP10-204ENST00000612052 616 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 AC016597.2-201ENST00000613256 341 ntBASIC5.67□□□□□ -1.5
HMGB1P09429 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC5.67□□□□□ -1.5
HMGB1P09429 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
HMGB1P09429 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HMGB1P09429 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
HMGB1P09429 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.67□□□□□ -1.5
HMGB1P09429 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
HMGB1P09429 AC066616.2-201ENST00000559334 1481 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.66□□□□□ -1.5
HMGB1P09429 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
HMGB1P09429 RNU6-560P-201ENST00000364007 108 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.66□□□□□ -1.5
HMGB1P09429 MIR105-2-201ENST00000385083 81 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 U3.30-201ENST00000391308 210 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AL592291.1-201ENST00000403830 352 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 OR2AM1P-201ENST00000422137 422 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC013410.2-201ENST00000422627 201 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 USP9YP24-201ENST00000434374 697 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AL590103.1-201ENST00000434488 307 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 HSD52-202ENST00000436225 772 ntTSL 3 BASIC5.66□□□□□ -1.5
HMGB1P09429 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC5.66□□□□□ -1.5
HMGB1P09429 USP9YP17-201ENST00000444617 696 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 RPL7P52-201ENST00000449200 742 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AL009048.1-201ENST00000450437 298 ntBASIC5.66□□□□□ -1.5
HMGB1P09429 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms