Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL359715.5-201ENST00000623431 443 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN3O15551 AC119744.1-201ENST00000454746 1715 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.14□□□□□ -1.75
CLDN3O15551 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN3O15551 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
CLDN3O15551 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN3O15551 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.14□□□□□ -1.75
CLDN3O15551 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CLDN3O15551 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC4.13□□□□□ -1.75
CLDN3O15551 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC4.13□□□□□ -1.75
CLDN3O15551 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 ZNF726-205ENST00000575986 1522 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 OR2AP1-201ENST00000321688 930 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
CLDN3O15551 AL589826.1-201ENST00000340697 249 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 MIR153-1-201ENST00000384914 90 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.13□□□□□ -1.75
CLDN3O15551 UBE2V1P15-201ENST00000407776 448 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 MORF4L1P7-201ENST00000426038 703 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 OR5AW1P-201ENST00000426334 1006 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 OR4F13P-201ENST00000428478 931 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AC005189.1-201ENST00000431286 310 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AL445584.1-201ENST00000431451 330 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 RPL37P1-201ENST00000432310 284 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 RPS26P40-201ENST00000435209 294 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 SNORA71B-202ENST00000439232 272 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 NOTCH2P1-201ENST00000443481 624 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 NANOGP10-201ENST00000453325 895 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 AL133162.1-201ENST00000463228 453 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 RN7SL542P-201ENST00000467147 294 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC4.13□□□□□ -1.75
CLDN3O15551 RAC1P2-201ENST00000511164 579 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 RNA5SP143-201ENST00000516936 115 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 C1DP5-201ENST00000525775 383 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 MIR5187-201ENST00000583479 76 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 HMGB1P50-201ENST00000605814 607 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 SNORA62.6-201ENST00000606322 83 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 Z98949.1-212ENST00000609820 837 ntTSL 5 BASIC4.13□□□□□ -1.75
CLDN3O15551 AL354696.1-201ENST00000614652 497 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.13□□□□□ -1.75
CLDN3O15551 AC034229.5-201ENST00000624258 185 ntBASIC4.13□□□□□ -1.75
CLDN3O15551 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.13□□□□□ -1.75
CLDN3O15551 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4.13□□□□□ -1.75
CLDN3O15551 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
CLDN3O15551 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.12□□□□□ -1.75
CLDN3O15551 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CLDN3O15551 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN3O15551 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CLDN3O15551 RNA5SP322-201ENST00000363617 119 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
CLDN3O15551 HLFP1-201ENST00000402375 499 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 NAP1L1P2-201ENST00000414182 1089 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AL139247.1-201ENST00000422768 325 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN3O15551 AL500522.2-201ENST00000448562 343 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC098824.1-201ENST00000453565 980 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC018635.1-201ENST00000468292 1030 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 NPM1P17-201ENST00000479221 602 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 AC092045.1-201ENST00000495716 1231 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 EIF4E-208ENST00000505992 898 ntTSL 5 BASIC4.12□□□□□ -1.75
CLDN3O15551 BTF3L4P4-201ENST00000506381 449 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC020593.1-201ENST00000507399 299 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 SAP18P1-201ENST00000512058 390 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 SUMO2P20-201ENST00000520803 283 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN3O15551 AC010306.1-201ENST00000523223 1117 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 MED28P5-201ENST00000528254 438 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 CACNA1C-IT2-201ENST00000541871 589 ntTSL 2 BASIC4.12□□□□□ -1.75
CLDN3O15551 AC107016.1-201ENST00000550463 337 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.12□□□□□ -1.75
CLDN3O15551 LLPHP1-201ENST00000603571 367 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 AC112230.1-201ENST00000604342 547 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.12□□□□□ -1.75
CLDN3O15551 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLDN3O15551 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
CLDN3O15551 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC4.12□□□□□ -1.75
CLDN3O15551 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLDN3O15551 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLDN3O15551 MTND4P21-201ENST00000453886 1357 ntBASIC4.12□□□□□ -1.75
CLDN3O15551 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CLDN3O15551 MTND5P11-201ENST00000511037 1812 ntBASIC4.11□□□□□ -1.75
CLDN3O15551 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC4.11□□□□□ -1.75
CLDN3O15551 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 ETV1-203ENST00000403527 3363 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CLDN3O15551 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms