Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RPL7P59-201ENST00000447700 943 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 Z99714.1-201ENST00000450463 807 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AL445488.1-201ENST00000457272 706 ntTSL 5 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 CCDC75P1-201ENST00000469247 791 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 MTND6P6-201ENST00000478031 263 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 MTCYBP16-201ENST00000509187 1129 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 SNORD116-26-201ENST00000516006 96 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 PSMB7P1-201ENST00000556349 514 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC008687.2-201ENST00000597865 520 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC091057.2-201ENST00000602594 792 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC069200.1-201ENST00000609511 323 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC009159.2-201ENST00000617603 606 ntBASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC4.44□□□□□ -1.7
COL28A1Q2UY09 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 PLCZ1-206ENST00000538330 1612 ntTSL 2 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SAMSN1-202ENST00000400564 1382 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 TLK1P1-201ENST00000456760 2440 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC107068.1-201ENST00000563286 4218 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SNORA63.1-201ENST00000362493 131 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 RNA5SP283-201ENST00000365604 119 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SNORD116.1-201ENST00000365628 92 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SNORD116-23-201ENST00000384645 92 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 MIR200C-201ENST00000384980 68 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 TAS2R15P-201ENST00000390674 928 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LAP3P1-201ENST00000403648 294 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AL162725.2-201ENST00000430545 748 ntTSL 5 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 PTENP1-201ENST00000447117 1215 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 RPL23AP15-201ENST00000450202 459 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 BOLA3P3-201ENST00000505182 232 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC093755.1-201ENST00000512950 1023 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SOD1P3-201ENST00000518682 454 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 MRPS36P3-201ENST00000519284 130 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC074029.1-201ENST00000552531 1044 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC084757.1-201ENST00000559987 490 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC090515.3-201ENST00000560431 315 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 MIR4512-201ENST00000583257 77 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 DSCR9-205ENST00000585273 751 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC061975.8-201ENST00000587058 721 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 IL33-205ENST00000611532 757 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC009464.1-201ENST00000615731 469 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 AC021755.4-201ENST00000616620 456 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 MIR492-201ENST00000638676 116 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 SAGE2P-201ENST00000420011 2126 ntBASIC4.43□□□□□ -1.7
COL28A1Q2UY09 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC4.43□□□□□ -1.7
COL28A1Q2UY09 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 LINC02426-201ENST00000550506 1372 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 MIR372-201ENST00000362225 67 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AL590084.1-201ENST00000407885 387 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 TMBIM7P-201ENST00000418074 855 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPL7P44-201ENST00000424827 742 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 YME1L1P1-201ENST00000429435 297 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 USP9YP31-201ENST00000431405 881 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 RPS20P1-201ENST00000434853 354 ntBASIC4.42□□□□□ -1.7
COL28A1Q2UY09 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC4.42□□□□□ -1.7
COL28A1Q2UY09 AC092393.1-201ENST00000439625 742 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms