Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SNORA70.2-201ENST00000364506 135 ntBASIC4.84□□□□□ -1.63
CIITAP33076 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 OR52E6-202ENST00000379946 954 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC019155.1-201ENST00000382242 574 ntBASIC4.84□□□□□ -1.63
CIITAP33076 RNU6-98P-201ENST00000384173 107 ntBASIC4.84□□□□□ -1.63
CIITAP33076 RNA5SP36-201ENST00000410197 133 ntBASIC4.84□□□□□ -1.63
CIITAP33076 MTND4P22-201ENST00000413116 1169 ntBASIC4.84□□□□□ -1.63
CIITAP33076 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 RBMY1KP-201ENST00000423480 476 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC4.84□□□□□ -1.63
CIITAP33076 SKP1P3-201ENST00000429280 487 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 BTF3P10-201ENST00000433415 495 ntBASIC4.84□□□□□ -1.63
CIITAP33076 CEACAMP1-201ENST00000434624 1035 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 AL117351.1-201ENST00000438864 766 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 EEF1A1P1-201ENST00000447052 739 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC005002.1-201ENST00000447458 540 ntBASIC4.84□□□□□ -1.63
CIITAP33076 RPL37P3-201ENST00000456825 293 ntBASIC4.84□□□□□ -1.63
CIITAP33076 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 AC105137.1-201ENST00000484355 562 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC108475.1-201ENST00000507880 950 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC008565.1-201ENST00000509046 885 ntBASIC4.84□□□□□ -1.63
CIITAP33076 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 PHBP17-201ENST00000528576 541 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC025265.1-201ENST00000551299 497 ntTSL 3 BASIC4.84□□□□□ -1.63
CIITAP33076 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 AC084757.1-201ENST00000559987 490 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC4.84□□□□□ -1.63
CIITAP33076 AC103808.1-201ENST00000579833 922 ntTSL 3 BASIC4.84□□□□□ -1.63
CIITAP33076 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC4.84□□□□□ -1.63
CIITAP33076 AC110743.1-201ENST00000584870 478 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AP001269.3-201ENST00000588718 329 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC4.84□□□□□ -1.63
CIITAP33076 AL358072.1-201ENST00000604156 575 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AL583856.2-201ENST00000606298 543 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AL360219.1-201ENST00000610230 366 ntBASIC4.84□□□□□ -1.63
CIITAP33076 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 AL450489.1-201ENST00000612071 468 ntBASIC4.84□□□□□ -1.63
CIITAP33076 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 STMN1P1-201ENST00000617809 440 ntBASIC4.84□□□□□ -1.63
CIITAP33076 MIR8059-201ENST00000620427 81 ntBASIC4.84□□□□□ -1.63
CIITAP33076 AP000676.3-201ENST00000623299 569 ntBASIC4.84□□□□□ -1.63
CIITAP33076 CDRT1-208ENST00000630868 794 ntBASIC4.84□□□□□ -1.63
CIITAP33076 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.84□□□□□ -1.63
CIITAP33076 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CIITAP33076 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
CIITAP33076 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
CIITAP33076 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
CIITAP33076 Z95327.2-201ENST00000414579 1873 ntBASIC4.83□□□□□ -1.64
CIITAP33076 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.83□□□□□ -1.64
CIITAP33076 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
CIITAP33076 CYP1D1P-201ENST00000416662 1433 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC005261.4-201ENST00000600047 1385 ntBASIC4.83□□□□□ -1.64
CIITAP33076 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 OR52B1P-201ENST00000316506 909 ntBASIC4.83□□□□□ -1.64
CIITAP33076 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 AC009237.10-201ENST00000414112 510 ntBASIC4.83□□□□□ -1.64
CIITAP33076 OR4K6P-201ENST00000416478 897 ntBASIC4.83□□□□□ -1.64
CIITAP33076 RSL24D1P6-201ENST00000426934 401 ntBASIC4.83□□□□□ -1.64
CIITAP33076 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 AC009299.3-203ENST00000435692 1096 ntTSL 5 BASIC4.83□□□□□ -1.64
CIITAP33076 HMGB1P45-201ENST00000435986 653 ntBASIC4.83□□□□□ -1.64
CIITAP33076 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 FGF7P5-201ENST00000441829 291 ntBASIC4.83□□□□□ -1.64
CIITAP33076 EXTL2P1-201ENST00000446218 416 ntBASIC4.83□□□□□ -1.64
CIITAP33076 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC4.83□□□□□ -1.64
CIITAP33076 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 NUTF2P3-201ENST00000448540 384 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC4.83□□□□□ -1.64
CIITAP33076 AC010468.1-201ENST00000461022 817 ntBASIC4.83□□□□□ -1.64
CIITAP33076 RN7SL385P-201ENST00000468873 276 ntBASIC4.83□□□□□ -1.64
CIITAP33076 LINC02053-202ENST00000488262 940 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CIITAP33076 BNIP3P41-201ENST00000503774 571 ntBASIC4.83□□□□□ -1.64
CIITAP33076 PARP4P3-201ENST00000510265 317 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 KCTD9P2-201ENST00000512203 1013 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC118465.1-201ENST00000513820 1271 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC099522.1-202ENST00000514718 367 ntBASIC4.83□□□□□ -1.64
CIITAP33076 RNU5A-4P-201ENST00000516588 111 ntBASIC4.83□□□□□ -1.64
CIITAP33076 snoZ278.1-201ENST00000517059 112 ntBASIC4.83□□□□□ -1.64
CIITAP33076 IGKV2-36-201ENST00000519999 223 ntBASIC4.83□□□□□ -1.64
CIITAP33076 NPM1P6-201ENST00000521088 871 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 AC087373.1-201ENST00000524920 491 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC022882.1-201ENST00000532142 501 ntBASIC4.83□□□□□ -1.64
CIITAP33076 AC100770.1-201ENST00000532310 322 ntBASIC4.83□□□□□ -1.64
CIITAP33076 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC4.83□□□□□ -1.64
CIITAP33076 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC4.83□□□□□ -1.64
CIITAP33076 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC4.83□□□□□ -1.64
CIITAP33076 AC068446.3-201ENST00000555285 382 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms