Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCDH11X-206ENST00000373097 9146 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
MSH3P20585 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.21□□□□□ -1.74
MSH3P20585 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.21□□□□□ -1.74
MSH3P20585 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 RNF6P1-201ENST00000444889 1784 ntBASIC4.2□□□□□ -1.74
MSH3P20585 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.2□□□□□ -1.74
MSH3P20585 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 AC005261.4-201ENST00000600047 1385 ntBASIC4.2□□□□□ -1.74
MSH3P20585 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 RPL32P3-201ENST00000359025 275 ntBASIC4.2□□□□□ -1.74
MSH3P20585 MIR383-201ENST00000362257 73 ntBASIC4.2□□□□□ -1.74
MSH3P20585 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 OR6C69P-201ENST00000394268 893 ntBASIC4.2□□□□□ -1.74
MSH3P20585 MIR1179-201ENST00000408703 91 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.2□□□□□ -1.74
MSH3P20585 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
MSH3P20585 AC005005.2-201ENST00000420779 380 ntBASIC4.2□□□□□ -1.74
MSH3P20585 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH3P20585 RPL23AP38-201ENST00000423801 469 ntBASIC4.2□□□□□ -1.74
MSH3P20585 NPM1P24-201ENST00000428039 894 ntBASIC4.2□□□□□ -1.74
MSH3P20585 NANOGP2-201ENST00000435391 727 ntBASIC4.2□□□□□ -1.74
MSH3P20585 HMGB1P45-201ENST00000435986 653 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH3P20585 RPL23AP46-201ENST00000438548 490 ntBASIC4.2□□□□□ -1.74
MSH3P20585 EEF1A1P1-201ENST00000447052 739 ntBASIC4.2□□□□□ -1.74
MSH3P20585 RNF148-202ENST00000447240 839 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 AL121877.1-201ENST00000453704 622 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH3P20585 TRBV8-2-201ENST00000475637 270 ntBASIC4.2□□□□□ -1.74
MSH3P20585 RN7SL691P-201ENST00000494487 301 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC104164.2-201ENST00000496953 495 ntBASIC4.2□□□□□ -1.74
MSH3P20585 PRELID3BP7-201ENST00000503606 469 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC108145.1-201ENST00000503770 153 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC108475.1-201ENST00000507880 950 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH3P20585 snoZ278.1-201ENST00000517059 112 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 MTND2P38-201ENST00000522536 667 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH3P20585 MTND4P33-201ENST00000556706 766 ntBASIC4.2□□□□□ -1.74
MSH3P20585 KPNA2P3-201ENST00000584190 848 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC245036.5-201ENST00000596330 847 ntBASIC4.2□□□□□ -1.74
MSH3P20585 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
MSH3P20585 AC243654.2-201ENST00000612843 443 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC021755.4-201ENST00000616620 456 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.2□□□□□ -1.74
MSH3P20585 AP000484.1-201ENST00000620067 1252 ntBASIC4.2□□□□□ -1.74
MSH3P20585 MIR6758-201ENST00000620653 63 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC015726.3-201ENST00000624501 418 ntBASIC4.2□□□□□ -1.74
MSH3P20585 MIR3653-201ENST00000625572 110 ntBASIC4.2□□□□□ -1.74
MSH3P20585 AC019226.2-201ENST00000625973 424 ntBASIC4.2□□□□□ -1.74
MSH3P20585 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.2□□□□□ -1.74
MSH3P20585 AC008013.2-202ENST00000637965 364 ntBASIC4.2□□□□□ -1.74
MSH3P20585 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
MSH3P20585 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
MSH3P20585 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 ANKRD20A10P-201ENST00000457591 1515 ntBASIC4.2□□□□□ -1.74
MSH3P20585 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
MSH3P20585 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSH3P20585 AC016588.2-201ENST00000632484 3021 ntBASIC4.19□□□□□ -1.74
MSH3P20585 MTCO1P6-201ENST00000481192 1384 ntBASIC4.19□□□□□ -1.74
MSH3P20585 TAS2R20-201ENST00000538986 1381 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
MSH3P20585 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
MSH3P20585 SNORD74.4-201ENST00000364129 80 ntBASIC4.19□□□□□ -1.74
MSH3P20585 SNORA62-201ENST00000365493 153 ntBASIC4.19□□□□□ -1.74
MSH3P20585 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
MSH3P20585 RNU6-636P-201ENST00000384598 107 ntBASIC4.19□□□□□ -1.74
MSH3P20585 MIR525-201ENST00000384978 85 ntBASIC4.19□□□□□ -1.74
MSH3P20585 MIR513A2-201ENST00000385249 127 ntBASIC4.19□□□□□ -1.74
MSH3P20585 MTND4P13-201ENST00000402078 1023 ntBASIC4.19□□□□□ -1.74
MSH3P20585 MIR1303-201ENST00000408625 86 ntBASIC4.19□□□□□ -1.74
MSH3P20585 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC4.19□□□□□ -1.74
MSH3P20585 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.19□□□□□ -1.74
MSH3P20585 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC4.19□□□□□ -1.74
MSH3P20585 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
MSH3P20585 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.19□□□□□ -1.74
MSH3P20585 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.19□□□□□ -1.74
MSH3P20585 CBX1P4-201ENST00000439415 457 ntBASIC4.19□□□□□ -1.74
MSH3P20585 AL353748.1-201ENST00000440753 474 ntBASIC4.19□□□□□ -1.74
MSH3P20585 EEF1A1P39-201ENST00000440791 250 ntBASIC4.19□□□□□ -1.74
MSH3P20585 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.19□□□□□ -1.74
MSH3P20585 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC4.19□□□□□ -1.74
MSH3P20585 AC112492.1-201ENST00000449607 712 ntBASIC4.19□□□□□ -1.74
MSH3P20585 AL137802.1-201ENST00000452795 327 ntTSL 5 BASIC4.19□□□□□ -1.74
MSH3P20585 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.19□□□□□ -1.74
MSH3P20585 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.19□□□□□ -1.74
MSH3P20585 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC4.19□□□□□ -1.74
MSH3P20585 AC105137.1-201ENST00000484355 562 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms