Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC10.55□□□□□ -0.72
MSH5O43196 AP000688.2-201ENST00000422473 2336 ntTSL 2 BASIC10.55□□□□□ -0.72
MSH5O43196 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 TDP1-203ENST00000393454 2068 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 LELP1-201ENST00000368747 523 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 AC084816.1-201ENST00000413794 565 ntTSL 4 BASIC10.55□□□□□ -0.72
MSH5O43196 SPATA20P1-201ENST00000423089 438 ntBASIC10.55□□□□□ -0.72
MSH5O43196 AC234779.1-201ENST00000425910 285 ntBASIC10.55□□□□□ -0.72
MSH5O43196 WDR82P1-201ENST00000439836 939 ntBASIC10.55□□□□□ -0.72
MSH5O43196 Y_RNA.637-201ENST00000459424 114 ntBASIC10.55□□□□□ -0.72
MSH5O43196 RN7SL12P-201ENST00000473849 290 ntBASIC10.55□□□□□ -0.72
MSH5O43196 RN7SL569P-201ENST00000494652 288 ntBASIC10.55□□□□□ -0.72
MSH5O43196 RNA5SP367-201ENST00000516557 118 ntBASIC10.55□□□□□ -0.72
MSH5O43196 AC090142.3-201ENST00000519012 385 ntBASIC10.55□□□□□ -0.72
MSH5O43196 IGKV2-36-201ENST00000519999 223 ntBASIC10.55□□□□□ -0.72
MSH5O43196 IPO5-222ENST00000490680 3419 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 TFDP2-212ENST00000486111 2360 ntAPPRIS P3 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 AL731532.2-201ENST00000623542 1953 ntBASIC10.55□□□□□ -0.72
MSH5O43196 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC10.55□□□□□ -0.72
MSH5O43196 NDRG3-204ENST00000373803 2978 ntTSL 5 BASIC10.55□□□□□ -0.72
MSH5O43196 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC10.55□□□□□ -0.72
MSH5O43196 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC10.55□□□□□ -0.72
MSH5O43196 AIFM1-205ENST00000460436 1925 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 CDK15-203ENST00000434439 2240 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 AC109361.1-201ENST00000513220 3526 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 MXRA7-207ENST00000592148 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 KDM5A-201ENST00000399788 10763 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 C3orf30-201ENST00000295622 1814 ntAPPRIS P2 TSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 ACAA2-206ENST00000589432 1840 ntTSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 LGSN-202ENST00000370658 5213 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 FBXL13-201ENST00000313221 2744 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 AP000812.1-201ENST00000378140 477 ntTSL 3 BASIC10.54□□□□□ -0.72
MSH5O43196 RNU6-787P-201ENST00000384032 107 ntBASIC10.54□□□□□ -0.72
MSH5O43196 AL592148.1-201ENST00000413568 445 ntBASIC10.54□□□□□ -0.72
MSH5O43196 AL359962.1-201ENST00000417969 303 ntTSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 CCDC77-203ENST00000422000 2338 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 PGBD4P5-201ENST00000445958 426 ntBASIC10.54□□□□□ -0.72
MSH5O43196 AC012501.1-201ENST00000454312 555 ntTSL 4 BASIC10.54□□□□□ -0.72
MSH5O43196 TRBV26-201ENST00000456572 344 ntBASIC10.54□□□□□ -0.72
MSH5O43196 CXCR6-203ENST00000457814 1184 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 AC006445.2-201ENST00000510061 472 ntBASIC10.54□□□□□ -0.72
MSH5O43196 RNA5SP96-201ENST00000516041 107 ntBASIC10.54□□□□□ -0.72
MSH5O43196 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 AC131935.1-201ENST00000524621 333 ntBASIC10.54□□□□□ -0.72
MSH5O43196 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 GNRHR2P1-201ENST00000555315 631 ntBASIC10.54□□□□□ -0.72
MSH5O43196 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 AL352984.2-201ENST00000611153 546 ntBASIC10.54□□□□□ -0.72
MSH5O43196 MIR6745-201ENST00000612694 127 ntBASIC10.54□□□□□ -0.72
MSH5O43196 RN7SL301P-202ENST00000618767 298 ntBASIC10.54□□□□□ -0.72
MSH5O43196 Metazoa_SRP.108-201ENST00000621610 300 ntBASIC10.54□□□□□ -0.72
MSH5O43196 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC10.54□□□□□ -0.72
MSH5O43196 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC10.54□□□□□ -0.72
MSH5O43196 OR8D4-202ENST00000641687 2904 ntAPPRIS P1 BASIC10.54□□□□□ -0.72
MSH5O43196 DCAF5-205ENST00000554215 4803 ntTSL 1 (best) BASIC10.54□□□□□ -0.72
MSH5O43196 CCDC162P-202ENST00000368966 6751 ntBASIC10.54□□□□□ -0.72
MSH5O43196 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC10.53□□□□□ -0.72
MSH5O43196 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC10.53□□□□□ -0.72
MSH5O43196 AC130650.2-201ENST00000618736 2403 ntBASIC10.53□□□□□ -0.72
MSH5O43196 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC10.53□□□□□ -0.72
MSH5O43196 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
MSH5O43196 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC10.53□□□□□ -0.72
MSH5O43196 Y_RNA.123-201ENST00000363338 102 ntBASIC10.53□□□□□ -0.72
MSH5O43196 RNU6-497P-201ENST00000365316 104 ntBASIC10.53□□□□□ -0.72
MSH5O43196 RNU6-1276P-201ENST00000365372 104 ntBASIC10.53□□□□□ -0.72
MSH5O43196 RNU6-213P-201ENST00000384051 104 ntBASIC10.53□□□□□ -0.72
MSH5O43196 MIR27A-201ENST00000385073 78 ntBASIC10.53□□□□□ -0.72
MSH5O43196 RNA5SP18-201ENST00000390935 121 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AL161787.1-201ENST00000401543 174 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC10.53□□□□□ -0.72
MSH5O43196 RPS10P18-201ENST00000442662 495 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AC108516.2-201ENST00000508163 349 ntTSL 5 BASIC10.53□□□□□ -0.72
MSH5O43196 RNU6-453P-201ENST00000516819 85 ntBASIC10.53□□□□□ -0.72
MSH5O43196 IGHVII-49-1-201ENST00000521760 224 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 CASP1-212ENST00000531166 300 ntTSL 5 BASIC10.53□□□□□ -0.72
MSH5O43196 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 AC079313.2-202ENST00000552053 511 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC10.53□□□□□ -0.72
MSH5O43196 LRRC37A5P-203ENST00000580181 585 ntBASIC10.53□□□□□ -0.72
MSH5O43196 GLYATL1P2-202ENST00000588046 902 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AL137190.1-201ENST00000603288 282 ntBASIC10.53□□□□□ -0.72
MSH5O43196 AP003789.1-201ENST00000617737 605 ntBASIC10.53□□□□□ -0.72
MSH5O43196 RPL36AP21-202ENST00000639134 430 ntBASIC10.53□□□□□ -0.72
MSH5O43196 FAM13A-AS1-202ENST00000511543 2453 ntTSL 2 BASIC10.53□□□□□ -0.72
MSH5O43196 FHL1-216ENST00000535737 2325 ntTSL 3 BASIC10.53□□□□□ -0.72
MSH5O43196 MEP1B-204ENST00000581447 2308 ntTSL 1 (best) BASIC10.53□□□□□ -0.72
MSH5O43196 NLRP8-202ENST00000590542 3090 ntAPPRIS ALT2 TSL 1 (best) BASIC10.53□□□□□ -0.72
Retrieved 100 of 98,524 protein–RNA pairs in 185.9 ms