Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 UBTFL3-201ENST00000418934 1024 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 RWDD4P2-201ENST00000426392 563 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 GTF2IP3-201ENST00000433887 494 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC114495.1-201ENST00000441274 436 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MTCO1P53-201ENST00000441633 699 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MRPL42P4-201ENST00000453267 443 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 RPS7P7-201ENST00000463499 571 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 RPL37P6-202ENST00000464216 403 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC020898.1-201ENST00000474167 787 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 UBTFL6-201ENST00000477929 1024 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC079203.1-201ENST00000487972 404 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 RPL35P6-201ENST00000490024 372 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 TPT1P8-201ENST00000510120 555 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC048346.1-201ENST00000510247 144 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 SCARNA1-201ENST00000517138 166 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AP001207.1-201ENST00000524051 481 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 DEFB130C-202ENST00000530001 230 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 CASP1-212ENST00000531166 300 ntTSL 5 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC074029.1-201ENST00000552531 1044 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC124068.1-201ENST00000563131 678 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MIR4509-3-201ENST00000578671 94 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MIR4509-2-201ENST00000583920 94 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 SLC25A36P1-201ENST00000590111 465 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 VN1R85P-201ENST00000601587 426 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MIR4509-1-201ENST00000618224 94 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 AC018529.3-201ENST00000624212 2254 ntBASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
NPIPA3F8WFD2 MRPL42-206ENST00000549982 15582 ntAPPRIS P2 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 RNA5SP175-201ENST00000364275 119 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 RNA5SP372-201ENST00000390836 115 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL022722.2-201ENST00000402519 180 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 RPS15AP40-201ENST00000419621 391 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 MFSD13B-201ENST00000420133 1290 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC004448.2-201ENST00000422360 586 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 EIF1P3-201ENST00000423841 334 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 TRAPPC2P9-201ENST00000434556 343 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 EXOSC3P1-201ENST00000448649 500 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 RPL35AP15-201ENST00000468042 339 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 PRELID3BP7-201ENST00000503606 469 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC008958.1-201ENST00000511047 682 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC092747.2-201ENST00000545069 983 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 ARL6IP1P1-201ENST00000545836 610 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 MIR5708-201ENST00000579723 85 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 BNIP3P40-201ENST00000596017 556 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL591034.3-201ENST00000605511 685 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL365400.2-201ENST00000605604 902 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 HSPE1P14-201ENST00000605812 302 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AC024060.1-201ENST00000607052 494 ntBASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC3.91□□□□□ -1.78
NPIPA3F8WFD2 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
NPIPA3F8WFD2 LARP1BP1-201ENST00000506036 1359 ntBASIC3.9□□□□□ -1.78
NPIPA3F8WFD2 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.78
NPIPA3F8WFD2 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC3.9□□□□□ -1.78
NPIPA3F8WFD2 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.9□□□□□ -1.79
NPIPA3F8WFD2 DIRC1-201ENST00000308100 1037 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
NPIPA3F8WFD2 SNAPC3-201ENST00000380799 753 ntTSL 3 BASIC3.9□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms