Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 MMP23A-201ENST00000234610 1017 ntBASIC20.21■□□□□ 0.83
USP3Q9Y6I4 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 AP005242.2-201ENST00000580065 1175 ntBASIC20.21■□□□□ 0.83
USP3Q9Y6I4 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
USP3Q9Y6I4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
USP3Q9Y6I4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 AC087499.1-201ENST00000418141 1075 ntBASIC20.2■□□□□ 0.82
USP3Q9Y6I4 FAM207BP-201ENST00000447172 505 ntBASIC20.2■□□□□ 0.82
USP3Q9Y6I4 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
USP3Q9Y6I4 AC096733.2-201ENST00000609937 1394 ntBASIC20.2■□□□□ 0.82
USP3Q9Y6I4 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.19■□□□□ 0.82
USP3Q9Y6I4 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
USP3Q9Y6I4 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 MIR1238-201ENST00000408483 83 ntBASIC20.18■□□□□ 0.82
USP3Q9Y6I4 AL390955.1-201ENST00000428694 934 ntBASIC20.18■□□□□ 0.82
USP3Q9Y6I4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 AC097488.1-201ENST00000507834 756 ntBASIC20.18■□□□□ 0.82
USP3Q9Y6I4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
USP3Q9Y6I4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms