Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.86■□□□□ 0.77
VPS28Q9UK41 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VPS28Q9UK41 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 AC004980.1-204ENST00000429707 299 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 AC026271.3-201ENST00000571884 352 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 REXO1L10P-201ENST00000615707 1290 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 REXO1L12P-201ENST00000622156 912 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VPS28Q9UK41 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 AL020996.1-203ENST00000536896 2307 ntBASIC19.85■□□□□ 0.77
VPS28Q9UK41 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.85■□□□□ 0.77
VPS28Q9UK41 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.84■□□□□ 0.77
VPS28Q9UK41 TSPY15P-201ENST00000457163 923 ntBASIC19.84■□□□□ 0.77
VPS28Q9UK41 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.84■□□□□ 0.77
VPS28Q9UK41 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VPS28Q9UK41 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS28Q9UK41 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS28Q9UK41 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VPS28Q9UK41 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VPS28Q9UK41 AC018445.3-201ENST00000624177 1945 ntBASIC19.83■□□□□ 0.77
VPS28Q9UK41 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 BX088651.1-201ENST00000540551 451 ntBASIC19.83■□□□□ 0.77
VPS28Q9UK41 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.83■□□□□ 0.77
VPS28Q9UK41 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
VPS28Q9UK41 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.83■□□□□ 0.76
VPS28Q9UK41 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VPS28Q9UK41 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VPS28Q9UK41 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 LINC01465-201ENST00000408887 1940 ntBASIC19.82■□□□□ 0.76
VPS28Q9UK41 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 AC116562.2-201ENST00000507042 360 ntBASIC19.82■□□□□ 0.76
VPS28Q9UK41 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 MIR6786-201ENST00000616843 113 ntBASIC19.82■□□□□ 0.76
VPS28Q9UK41 AC073912.3-201ENST00000624414 853 ntBASIC19.82■□□□□ 0.76
VPS28Q9UK41 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VPS28Q9UK41 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.82■□□□□ 0.76
VPS28Q9UK41 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms