Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 LINC01465-201ENST00000408887 1940 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 KRT8P41-201ENST00000533985 1514 ntBASIC19.4■□□□□ 0.7
DKK3Q9UBP4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.4■□□□□ 0.7
DKK3Q9UBP4 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 AC104417.2-201ENST00000562989 1793 ntBASIC19.39■□□□□ 0.7
DKK3Q9UBP4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
DKK3Q9UBP4 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 AC097488.1-201ENST00000507834 756 ntBASIC19.39■□□□□ 0.69
DKK3Q9UBP4 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.39■□□□□ 0.69
DKK3Q9UBP4 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AC012306.2-201ENST00000609350 630 ntBASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AC096733.2-201ENST00000609937 1394 ntBASIC19.38■□□□□ 0.69
DKK3Q9UBP4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC19.38■□□□□ 0.69
DKK3Q9UBP4 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 TREX1-205ENST00000625293 1783 ntBASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AC097493.4-201ENST00000641197 219 ntBASIC19.38■□□□□ 0.69
DKK3Q9UBP4 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
DKK3Q9UBP4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 LINC01023-201ENST00000606054 436 ntBASIC19.37■□□□□ 0.69
DKK3Q9UBP4 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.37■□□□□ 0.69
DKK3Q9UBP4 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC19.36■□□□□ 0.69
DKK3Q9UBP4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms