Protein–RNA interactions for Protein: Q9NZC9

SMARCAL1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1, humanhuman

Predictions only

Length 954 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1Q9NZC9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.33■□□□□ 0.85
SMARCAL1Q9NZC9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 AL031598.1-201ENST00000561511 1773 ntBASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
SMARCAL1Q9NZC9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 CDCA4P2-201ENST00000441182 718 ntBASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 SERP1-205ENST00000487153 657 ntTSL 4 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SMARCAL1Q9NZC9 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 AL589743.5-201ENST00000616611 1050 ntBASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
SMARCAL1Q9NZC9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 AC069236.1-201ENST00000604339 616 ntBASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 AC005181.1-201ENST00000604782 1256 ntBASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC20.3■□□□□ 0.84
SMARCAL1Q9NZC9 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.29■□□□□ 0.84
SMARCAL1Q9NZC9 AC090164.3-201ENST00000610780 2143 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms