Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC24.58■■□□□ 1.53
USP42Q9H9J4 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC24.58■■□□□ 1.53
USP42Q9H9J4 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
USP42Q9H9J4 AC073130.3-201ENST00000624389 2278 ntBASIC24.58■■□□□ 1.53
USP42Q9H9J4 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP42Q9H9J4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.53
USP42Q9H9J4 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP42Q9H9J4 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
USP42Q9H9J4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
USP42Q9H9J4 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC24.58■■□□□ 1.52
USP42Q9H9J4 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 AC026396.1-201ENST00000419388 421 ntBASIC24.58■■□□□ 1.52
USP42Q9H9J4 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 CKBP1-201ENST00000565489 1086 ntBASIC24.58■■□□□ 1.52
USP42Q9H9J4 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC24.58■■□□□ 1.52
USP42Q9H9J4 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
USP42Q9H9J4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC24.58■■□□□ 1.52
USP42Q9H9J4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
USP42Q9H9J4 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC24.57■■□□□ 1.52
USP42Q9H9J4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 KRT8P45-201ENST00000414328 1447 ntBASIC24.56■■□□□ 1.52
USP42Q9H9J4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 NME1-207ENST00000480143 964 ntTSL 2 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 AL136038.3-201ENST00000561909 1096 ntBASIC24.56■■□□□ 1.52
USP42Q9H9J4 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 AC083849.1-201ENST00000615227 514 ntBASIC24.56■■□□□ 1.52
USP42Q9H9J4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
USP42Q9H9J4 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
USP42Q9H9J4 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC24.55■■□□□ 1.52
USP42Q9H9J4 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 KRT8P41-201ENST00000533985 1514 ntBASIC24.55■■□□□ 1.52
USP42Q9H9J4 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
USP42Q9H9J4 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC24.54■■□□□ 1.52
USP42Q9H9J4 TCF3P1-201ENST00000423021 1937 ntBASIC24.54■■□□□ 1.52
USP42Q9H9J4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC24.54■■□□□ 1.52
USP42Q9H9J4 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 SNX5-210ENST00000481323 562 ntTSL 3 BASIC24.54■■□□□ 1.52
USP42Q9H9J4 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 VENTXP5-201ENST00000523979 775 ntBASIC24.54■■□□□ 1.52
USP42Q9H9J4 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC24.54■■□□□ 1.52
USP42Q9H9J4 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC24.54■■□□□ 1.52
USP42Q9H9J4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
USP42Q9H9J4 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC24.54■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms