Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.87■■□□□ 1.09
ERCC4Q92889 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.87■■□□□ 1.09
ERCC4Q92889 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
ERCC4Q92889 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ERCC4Q92889 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ERCC4Q92889 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
ERCC4Q92889 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
ERCC4Q92889 AC006333.2-201ENST00000607957 2099 ntBASIC21.86■■□□□ 1.09
ERCC4Q92889 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
ERCC4Q92889 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.86■■□□□ 1.09
ERCC4Q92889 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.86■■□□□ 1.09
ERCC4Q92889 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.86■■□□□ 1.09
ERCC4Q92889 AC005829.2-201ENST00000571422 1056 ntBASIC21.86■■□□□ 1.09
ERCC4Q92889 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC21.86■■□□□ 1.09
ERCC4Q92889 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.86■■□□□ 1.09
ERCC4Q92889 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
ERCC4Q92889 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.86■■□□□ 1.09
ERCC4Q92889 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC21.86■■□□□ 1.09
ERCC4Q92889 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.86■■□□□ 1.09
ERCC4Q92889 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
ERCC4Q92889 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 HCG11-201ENST00000411553 5696 ntBASIC21.85■■□□□ 1.09
ERCC4Q92889 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC21.85■■□□□ 1.09
ERCC4Q92889 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC21.85■■□□□ 1.09
ERCC4Q92889 AC083906.2-201ENST00000511578 360 ntBASIC21.85■■□□□ 1.09
ERCC4Q92889 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.85■■□□□ 1.09
ERCC4Q92889 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.85■■□□□ 1.09
ERCC4Q92889 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC21.85■■□□□ 1.09
ERCC4Q92889 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
ERCC4Q92889 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 SDHAP1-207ENST00000440850 2000 ntBASIC21.85■■□□□ 1.09
ERCC4Q92889 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC21.85■■□□□ 1.09
ERCC4Q92889 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
ERCC4Q92889 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
ERCC4Q92889 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
ERCC4Q92889 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
ERCC4Q92889 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
ERCC4Q92889 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
ERCC4Q92889 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
ERCC4Q92889 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
ERCC4Q92889 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 ZNF815P-204ENST00000434898 1737 ntBASIC21.83■■□□□ 1.09
ERCC4Q92889 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 AIRN-201ENST00000601203 4374 ntBASIC21.83■■□□□ 1.09
ERCC4Q92889 AC141586.3-201ENST00000562166 1838 ntBASIC21.83■■□□□ 1.09
ERCC4Q92889 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.83■■□□□ 1.09
ERCC4Q92889 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 GUSBP6-202ENST00000438529 1198 ntBASIC21.83■■□□□ 1.09
ERCC4Q92889 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.09
ERCC4Q92889 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.83■■□□□ 1.08
ERCC4Q92889 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
ERCC4Q92889 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
ERCC4Q92889 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
ERCC4Q92889 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
ERCC4Q92889 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ERCC4Q92889 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.82■■□□□ 1.08
ERCC4Q92889 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.82■■□□□ 1.08
ERCC4Q92889 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC21.82■■□□□ 1.08
ERCC4Q92889 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.82■■□□□ 1.08
ERCC4Q92889 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC21.82■■□□□ 1.08
ERCC4Q92889 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
ERCC4Q92889 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.82■■□□□ 1.08
ERCC4Q92889 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ERCC4Q92889 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ERCC4Q92889 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ERCC4Q92889 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ERCC4Q92889 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC21.81■■□□□ 1.08
ERCC4Q92889 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms