Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC23.69■■□□□ 1.38
CCDC88AQ3V6T2 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 PHB2-202ENST00000440277 996 ntTSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 FEM1AP1-201ENST00000431297 1995 ntBASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 GPALPP1-207ENST00000611650 899 ntBASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC23.68■■□□□ 1.38
CCDC88AQ3V6T2 AL512408.1-201ENST00000569378 2000 ntBASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC23.67■■□□□ 1.38
CCDC88AQ3V6T2 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 SLC25A6P4-201ENST00000586535 553 ntBASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 AL691432.2-201ENST00000607222 2038 ntBASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 GCSHP2-201ENST00000560971 527 ntBASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 AC092329.2-201ENST00000598402 547 ntBASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC23.66■■□□□ 1.38
CCDC88AQ3V6T2 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 AC009078.2-202ENST00000463353 338 ntBASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 AL137060.1-201ENST00000618151 2648 ntBASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
CCDC88AQ3V6T2 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 AL160286.2-201ENST00000567150 934 ntBASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 AC120114.3-201ENST00000611923 658 ntBASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC23.64■■□□□ 1.38
CCDC88AQ3V6T2 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
CCDC88AQ3V6T2 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
CCDC88AQ3V6T2 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
CCDC88AQ3V6T2 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC23.64■■□□□ 1.37
CCDC88AQ3V6T2 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 KRT8P41-201ENST00000533985 1514 ntBASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 ILF2-202ENST00000368681 726 ntTSL 2 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 TSPY12P-201ENST00000421279 868 ntBASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC23.63■■□□□ 1.37
CCDC88AQ3V6T2 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.63■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms