Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 UNC93B2-201ENST00000285383 730 ntBASIC17.89■□□□□ 0.45
RNF4P78317 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RNF4P78317 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.89■□□□□ 0.45
RNF4P78317 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF4P78317 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF4P78317 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC17.89■□□□□ 0.45
RNF4P78317 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC17.89■□□□□ 0.45
RNF4P78317 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC17.89■□□□□ 0.45
RNF4P78317 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RNF4P78317 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
RNF4P78317 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
RNF4P78317 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
RNF4P78317 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
RNF4P78317 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
RNF4P78317 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 AC004951.3-201ENST00000418645 1148 ntBASIC17.88■□□□□ 0.45
RNF4P78317 RBM17P1-201ENST00000453646 1190 ntBASIC17.88■□□□□ 0.45
RNF4P78317 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.88■□□□□ 0.45
RNF4P78317 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC17.88■□□□□ 0.45
RNF4P78317 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.88■□□□□ 0.45
RNF4P78317 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 AC130371.2-201ENST00000619443 611 ntBASIC17.88■□□□□ 0.45
RNF4P78317 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.88■□□□□ 0.45
RNF4P78317 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
RNF4P78317 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
RNF4P78317 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
RNF4P78317 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RNF4P78317 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 AL158211.5-201ENST00000623583 2518 ntBASIC17.87■□□□□ 0.45
RNF4P78317 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.87■□□□□ 0.45
RNF4P78317 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 BX088651.1-201ENST00000540551 451 ntBASIC17.87■□□□□ 0.45
RNF4P78317 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
RNF4P78317 AC011298.2-201ENST00000617989 482 ntBASIC17.87■□□□□ 0.45
RNF4P78317 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
RNF4P78317 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
RNF4P78317 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.87■□□□□ 0.45
RNF4P78317 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC17.87■□□□□ 0.45
RNF4P78317 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.87■□□□□ 0.45
RNF4P78317 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
RNF4P78317 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.86■□□□□ 0.45
RNF4P78317 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.86■□□□□ 0.45
RNF4P78317 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC17.86■□□□□ 0.45
RNF4P78317 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.86■□□□□ 0.45
RNF4P78317 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.86■□□□□ 0.45
RNF4P78317 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.86■□□□□ 0.45
RNF4P78317 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC17.86■□□□□ 0.45
RNF4P78317 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
RNF4P78317 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms