Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.91■□□□□ 0.62
SHMT2P34897 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 NIFKP9-201ENST00000419265 221 ntBASIC18.91■□□□□ 0.62
SHMT2P34897 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.91■□□□□ 0.62
SHMT2P34897 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.91■□□□□ 0.62
SHMT2P34897 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.91■□□□□ 0.62
SHMT2P34897 AC073195.1-201ENST00000607241 877 ntBASIC18.91■□□□□ 0.62
SHMT2P34897 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.91■□□□□ 0.62
SHMT2P34897 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.91■□□□□ 0.62
SHMT2P34897 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
SHMT2P34897 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SHMT2P34897 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SHMT2P34897 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
SHMT2P34897 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.9■□□□□ 0.62
SHMT2P34897 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.9■□□□□ 0.62
SHMT2P34897 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.9■□□□□ 0.62
SHMT2P34897 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
SHMT2P34897 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.9■□□□□ 0.62
SHMT2P34897 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
SHMT2P34897 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
SHMT2P34897 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.62
SHMT2P34897 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.62
SHMT2P34897 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.89■□□□□ 0.62
SHMT2P34897 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHMT2P34897 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SHMT2P34897 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC18.89■□□□□ 0.61
SHMT2P34897 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SHMT2P34897 KSR1P1-201ENST00000446298 240 ntBASIC18.89■□□□□ 0.61
SHMT2P34897 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.89■□□□□ 0.61
SHMT2P34897 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.89■□□□□ 0.61
SHMT2P34897 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.89■□□□□ 0.61
SHMT2P34897 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
SHMT2P34897 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.89■□□□□ 0.61
SHMT2P34897 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SHMT2P34897 AIRN-201ENST00000601203 4374 ntBASIC18.88■□□□□ 0.61
SHMT2P34897 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SHMT2P34897 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.88■□□□□ 0.61
SHMT2P34897 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SHMT2P34897 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SHMT2P34897 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SHMT2P34897 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
SHMT2P34897 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.88■□□□□ 0.61
SHMT2P34897 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
SHMT2P34897 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.88■□□□□ 0.61
SHMT2P34897 AC113410.3-201ENST00000623366 203 ntBASIC18.88■□□□□ 0.61
SHMT2P34897 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.88■□□□□ 0.61
SHMT2P34897 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.88■□□□□ 0.61
SHMT2P34897 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.88■□□□□ 0.61
SHMT2P34897 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHMT2P34897 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms