Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
COL8A1P27658 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC16.87■□□□□ 0.29
COL8A1P27658 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
COL8A1P27658 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 Z85996.1-201ENST00000494644 937 ntBASIC16.87■□□□□ 0.29
COL8A1P27658 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.87■□□□□ 0.29
COL8A1P27658 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL8A1P27658 AL137060.1-201ENST00000618151 2648 ntBASIC16.87■□□□□ 0.29
COL8A1P27658 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.87■□□□□ 0.29
COL8A1P27658 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 AC016734.2-201ENST00000624325 1377 ntBASIC16.87■□□□□ 0.29
COL8A1P27658 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
COL8A1P27658 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC16.87■□□□□ 0.29
COL8A1P27658 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
COL8A1P27658 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC16.86■□□□□ 0.29
COL8A1P27658 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
COL8A1P27658 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.86■□□□□ 0.29
COL8A1P27658 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
COL8A1P27658 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.86■□□□□ 0.29
COL8A1P27658 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.86■□□□□ 0.29
COL8A1P27658 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
COL8A1P27658 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC16.86■□□□□ 0.29
COL8A1P27658 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.86■□□□□ 0.29
COL8A1P27658 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.86■□□□□ 0.29
COL8A1P27658 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
COL8A1P27658 KRT18P13-201ENST00000400056 1290 ntBASIC16.85■□□□□ 0.29
COL8A1P27658 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 AP002383.4-201ENST00000442518 975 ntBASIC16.85■□□□□ 0.29
COL8A1P27658 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.85■□□□□ 0.29
COL8A1P27658 BX276092.5-203ENST00000456199 560 ntBASIC16.85■□□□□ 0.29
COL8A1P27658 AC092597.1-201ENST00000487352 616 ntBASIC16.85■□□□□ 0.29
COL8A1P27658 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
COL8A1P27658 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.85■□□□□ 0.29
COL8A1P27658 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC16.85■□□□□ 0.29
COL8A1P27658 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC16.85■□□□□ 0.29
COL8A1P27658 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.85■□□□□ 0.29
COL8A1P27658 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC16.85■□□□□ 0.29
COL8A1P27658 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.85■□□□□ 0.29
COL8A1P27658 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
COL8A1P27658 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 HBZP1-201ENST00000354915 429 ntBASIC16.84■□□□□ 0.29
COL8A1P27658 AP000523.1-201ENST00000398242 1049 ntBASIC16.84■□□□□ 0.29
COL8A1P27658 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.84■□□□□ 0.29
COL8A1P27658 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.84■□□□□ 0.29
COL8A1P27658 AP002414.4-201ENST00000589764 1148 ntBASIC16.84■□□□□ 0.29
COL8A1P27658 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
COL8A1P27658 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 AC120114.3-201ENST00000611923 658 ntBASIC16.84■□□□□ 0.29
COL8A1P27658 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC16.84■□□□□ 0.29
COL8A1P27658 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.84■□□□□ 0.29
COL8A1P27658 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.84■□□□□ 0.29
COL8A1P27658 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC16.84■□□□□ 0.29
COL8A1P27658 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC16.84■□□□□ 0.29
COL8A1P27658 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
COL8A1P27658 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC16.83■□□□□ 0.29
COL8A1P27658 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
COL8A1P27658 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms